Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01225 ATGGCCACCACCGCGGAGAGGGATATGGAGAACAAGAGTCACGAAGAACTGAAGCATCTTGGGTTTGTTAAGATTGCAGCAATCAAAGCCTTTGTGTGTGTGTCGAATCTCTACGACTTCGCAAAACAAAACTCGGGACCTTTGAGATCTGCTGTTGGAACCGTCGAATGCACTGTAACTACCGTTTTGGGTCCCGTCTACCAAAAATTCAAGGCTGTCCCCAACCATCTTCTCCTTTTTGTGGACAATAAGGTGGATGAAGCAGCCCACAAATTCGATGAGCATGCACCTTCTTTGGTTAAGCAGGTTGCAACCCAAGCGAATTGTTTGGTTCAGGAAGTGACACACAAAGCTGAGAAAGTAGTGAGTGAGGCTCAATCTGGAGGGGCACGTGCAGCAGCACACTACGTTGCCACAGAGTCTAAGCAAGTTGTGCTCTTTGGTTTGGTGAAATTGTGGACTGGTCTCAACCACTACCCACCATTCCATGCAGTGGCAGAGATGGCAGTTCCCACAGCTGCACACTGGTCAGAAAAATACAACAATGTGGTCAAGGGAATGAGTGAAAAGGGTTGTGCTGCGTTTGGGTATTTGCCTTTGATTCCAACTGATGAAATAGCCAAGGCGTTTAAACAGGGAGAAGGCAATGTGAATGACGATGAAGCAGGTTCCGTGGGAGAGAGTTCTTATTGA 693 0.4747 MATTAERDMENKSHEELKHLGFVKIAAIKAFVCVSNLYDFAKQNSGPLRSAVGTVECTVTTVLGPVYQKFKAVPNHLLLFVDNKVDEAAHKFDEHAPSLVKQVATQANCLVQEVTHKAEKVVSEAQSGGARAAAHYVATESKQVVLFGLVKLWTGLNHYPPFHAVAEMAVPTAAHWSEKYNNVVKGMSEKGCAAFGYLPLIPTDEIAKAFKQGEGNVNDDEAGSVGESSY 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01225 230 PANTHER REF/SRPP-LIKE PROTEIN OS05G0151300/LOC_OS05G05940 11 217 IPR008802 -
Pumo6g01225 230 Pfam Rubber elongation factor protein (REF) 12 212 IPR008802 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01225 Pumo-Chr6 16237872 16239484 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01225 - - gmx:100499806 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01225 6 16237872 16239484 Pumo6g01225 6 16237872 16239484 ECH
Pumo1g00455 1 6174089 6176179 Pumo6g01225 6 16237872 16239484 PCT