Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00876 ATGGGTAGGTGGTGGTCGTGGACGTTGGTTTTCACTTTTCTCTCTGCGCTAATAGTAATAATAGCATTGCTCCCCGGAGCCACAGTAGTCGAAGAAGTTGATCGTGATCACACAGTGGCTGCGACGGGTCTTCTTCACACCGATTCCCGATGGATCGTGAACCAAGATGGGCAAAGAGTGAAGCTGGCCTGTGTGAATTGGGTGGCCCATTTGGAAGTTGCGGTGGCCGAAGGGCTCAGCAAAAAGCCCGTGGATGTGATTTCCAAGGGAATAAAGTCCATGGGCTTCAACTGTGTCAGGCTCACTTGGCCCACACTTTTGGTCACCAATGACTCTCTCGCTTCTCTCACCGTTAGACGATCTTTTCAGAGCCTTGGCCTCCTTGAATCCGTTGCTGGTGTCCAAACCAACAACCCCTCCATCATCGATCTTCCCCTTATCCAAGCCTTTCAGGCAGTGGTGAAGAGTCTTGGGGACAACGATGTGATGGTGATTTTGGACAACCACGTGACCCAGCCAGGATGGTGCTGCGGTAACACGGACGGTAATGGATTCTTCGGTGACAAATTTCTAGACCCAAACCAGTGGATATTGGGCCTCACCAAGATAACCACCCTTTTCAAAGGAGTTACAGCAGTAGTGGGCATAAGCTTGAGGAATGAACTCCGAGGATCTAAACAGAATGTTAATGATTGGTACAAGTACATGGTGAAAGGAGCAGAAGCTGTTCATGCAGCAAACCCAGATGTTCTTGTCATTCTATCTGGCCTAAACTTTGACACGGACTTATCATTCATTCGGGATCGACCAGTGAGCCTCACGTTCAAAGGGAAGCTAGTATTTGAGGTGCACAGGTATGGCTTCACTGATGGTGGAGCTTGGGCTGATGGGAACCCAAACCAAGTGTGTGGAAAAGTGACAGCAGATATAAAGAAAACATCTGGCTTCTTGGTGGACCAAGGATGGCCATTGTTTGTGAGTGAGTTTGGTGGGGACTTGAGAGGTACCAACGTGAATGACAACCGATACCTTAACTGTTTTCTGGCGCTGGTAGCTGAGCTTGACTTGGATTGGGCCTATTGGACACTTGTTGGCAGTTACTACTTTAGAGAAGGGGTTATAGGAATGGAAGAGTTTTATGGGCTTCTCACTTGGGATTGGACTCAGGTTAGGAGTACCAGTTTCTTAAAGAGAATCGCTGCCCTCCAACTTCCATTTCGAGGACCTGGCATCATACAAGGCAATCCACACAAACTGATATTCCACCCTTTGACAGGTCTCTGCGTCATAAGTAAATCACAGCTAACATCACTAACGTTGGGTCCTTGCTCTTCTTCTGATGGCTGGACATACACACCTCAAAAGACCCTATTGATAAACAATACAAACTTCTGCATACATGCAGAGAAAGAAAGGAAGCCTGCAACACTTAGCATGACATGCTCAGATCCTAACTCTAAATGGGAAATTATCTCAGATTCGAACATGCACCTTTCATCTGAACTAAGCGACGGTTCAAACTTGTGTCTAGATGTAGATGATAACAACATCATTGTGACCAATGCTTGTAAATGCTTGAGCAAAGATAAGACATGTGACCCTGGAAGCCAATGGTTCAAATTTATTGATAGTGGAAGGAGGTCAATCTCGACAACCTCAACATTATCCATGCTGAACTCACAGGACCTTTTGTGGAAACCTTGTGTAACGATATGA 1716 0.4645 MGRWWSWTLVFTFLSALIVIIALLPGATVVEEVDRDHTVAATGLLHTDSRWIVNQDGQRVKLACVNWVAHLEVAVAEGLSKKPVDVISKGIKSMGFNCVRLTWPTLLVTNDSLASLTVRRSFQSLGLLESVAGVQTNNPSIIDLPLIQAFQAVVKSLGDNDVMVILDNHVTQPGWCCGNTDGNGFFGDKFLDPNQWILGLTKITTLFKGVTAVVGISLRNELRGSKQNVNDWYKYMVKGAEAVHAANPDVLVILSGLNFDTDLSFIRDRPVSLTFKGKLVFEVHRYGFTDGGAWADGNPNQVCGKVTADIKKTSGFLVDQGWPLFVSEFGGDLRGTNVNDNRYLNCFLALVAELDLDWAYWTLVGSYYFREGVIGMEEFYGLLTWDWTQVRSTSFLKRIAALQLPFRGPGIIQGNPHKLIFHPLTGLCVISKSQLTSLTLGPCSSSDGWTYTPQKTLLINNTNFCIHAEKERKPATLSMTCSDPNSKWEIISDSNMHLSSELSDGSNLCLDVDDNNIIVTNACKCLSKDKTCDPGSQWFKFIDSGRRSISTTSTLSMLNSQDLLWKPCVTI 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00876 571 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 24 544 - -
Pumo6g00876 571 Gene3D - 420 541 - -
Pumo6g00876 571 SMART ricin_3 415 535 IPR000772 -
Pumo6g00876 571 Pfam Cellulase (glycosyl hydrolase family 5) 84 363 IPR001547 GO:0004553|GO:0071704
Pumo6g00876 571 CDD RICIN 418 541 IPR000772 -
Pumo6g00876 571 SUPERFAMILY Ricin B-like lectins 413 541 IPR035992 -
Pumo6g00876 571 Gene3D Glycosidases 40 403 - -
Pumo6g00876 571 SUPERFAMILY (Trans)glycosidases 41 392 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00876 Pumo-Chr6 10922710 10926395 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00876 45 546 Glycoside Hydrolase AT1G13130 59.208 0.0 631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00876 - - gmx:100789885 1080.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00876 6 10922710 10926395 Pumo6g00876 6 10922710 10926395 ECH