Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00692 ATGGACGCGGATCTGAAGTCAGCGAAAGCGGCGTACCGGAACGCCAAGGCGGAGGGCAACCACCGGGAGGAGGCGCGGTGGGCCAACGTCATCGGCGACATACTGAAAAACCAAGGAGAGTACATCGAAGCCCTCAAATGGCTCCGAATCGATTACGACATTTCGCTCAAACATTTACCGGAAAAGCACTTGCTTCCAACATGCCAATCCCTCGGCGAAATGTATCTCCGTCTCGAACACTTCTCCGATGCCCTAATTTATCAGAAAAAGCACTTGGAGCTCGCGAGGGACGCAGACGACGTCGTTGAGCAGCAGCGAGCGAGCACGCAACTCGGTCGCACTTATCACGAACTGTTCTCGCGATCTGAGCACGATCACAACTCGATTCGCAACGCGAAGAAGTACTTCAAGTGCGCGATGGATCTCGCGGTGAAGCTCAAGGAGAATCCTCCGAACAGCAAGTCCTCTTTTCTCAAGGAGTACATCGACGCGCACAACAACATTGGTATGCTGGAGATGGAACTCGATAACTTGCACGAGGCGCGGAAGATCTTAACTAGAGGATTGGAGATTTGCGACGAAGAGGAGGTTGCTGAATTCGATGATGGCCGTAGTAGACTCCACCATAACCTTGGGAATGTGTATATGGAACTTAGGGATTGGAATGAGGCTAGGAAACACATTCAGAAGGATATTGTAATTTGCAACAGAATTGGACATCGTCAAGGGGAAGCCAAGGGGTATATTAATCTTGGTGAAGTGCATTACAGGACTCAGAAGTATGAAGATGCAAGTGCTTATTATGAGAAGGCACTTGGGTTGGCGCAGAGCTTGGAGGATGAGGATGCTTTGGTAAGGCAAATTGAGCAGAATATTGAAACTGTGAGAGAAGCTGTTAAGGTAATGGCTGATATAAAGAAAGAAGAGCAGAGCCTTAAGAAGCTCAAAAGAGATATAGCTACGGCCAGAGGGACACCAAATGAGCGCAAATTCTTGCTGCAGCAGAATGCAGTTCTTGAGCGCCTGGTTGAGAAAGCAAGGATGATCTCAGCGTGGGAGAAGCATTGTGAATTTGCAAAGGAGAAGAAGAAAATAGCAAGTGAACTCTGTGATAGGCAGAAGCTGGCTGATTCATATCTGGATGTTGCAGAATCATATCAGAAACTCAGAAAATTCAACAAAGCAATCAAATGGTACAAAAAGAGTTGGGAAACGCACAAAAATATTGGTAACTTAGAGGGGCAAGCACTGGCGAAAATTAATATTGGTAATGTTTTGGATTCTACTGAAAAATGGAGAGAAGCATTGGATGCATTTCAAGAGAGCTACAGTATTGCTGTTGAAGCAGACCTTCCTAATGTGCAACTCTCTGCCTTGGAAAATATGCATTATAGCAACATGATAAGATTTGATGATGAGGATGAGACCAGGAGGTTGAAGCTTCTAATTGATAAGCTGAAGAAAGCAGAAGAAAAAGAGGCAGAAGCTAAAAGAATGCCAGAGGATTTTTGCTCTGAAACTGATACTGAAGCAGATGATTATCTGTCAAACAGTGGGTCTGATGATTTTTGCTTTCCAAAGACAATTTCTCAATCAAAAACTCTGACTACTGAAGAATTGAAAGATGATGCGCCTCTTATGTCACTCTATCAGTCCATAAAAGGCTCATCCAAAAAGAAAGCAGGCCACAAAGAAAGTCTTACCAACTCTACCAAGCAAGATGAGCAGTCACCCAGTAGTCTGAAAAATCAAACCAGTGATCATCAGACAGTTGTTGGTCGTAAACGTGTCCGTGTAATTCTTTCTGATGATGATGAGGTTGAGTGTTCAAGCAGAAAGGATCATGCTTGCCTGGTAGAGGACTTGCCCACTTATGATGCCATTAAGAGGAAAGCCAGTCCTTGTAAAATTCAGGTTATCTCAGAGTATGGATCCAAGTGTGCAATTGATGTCGAAGAAAGTAGTAGTTCTTTCAAATGTTCGAGTCCACATACAGCCACAAAAACTGGTAGACTCTCCAGGTCTTTGAGCAACAATATAGTTGCTGAACCTGATTTTCCTAGTGGCAGACACTCCAGGTCTTTGGCAGACACTTCTAAATGTGACACTGATGTCTCTGGCAAACAAAATGATATTGCCCAGCCCATGTTGCATCATTCCCAAAATGACTTCCAGCAATATATTACATGCCGGATTGGGAATGATCTAATACATGTAGAAGCAACCTTGTGTACCACTGGTGATCAGTTGAACATTGACTCTTTGAAGGCTGTAGTTGCTTGCTTATATTATCTACAATTTCCAACTGAAAAGAGATCAGAGGGTTTGTTGCCCATTATTGAGCATATAAAAAGTTCTGGAAGAGATCTAGAATCCCTGGAAACAGTTGAACATCTTAAGGAAGTTCTGGGAAATGACATGGTTGAAGCTTCCGTTGATGGATGGATTCACAAGCGCCTGATAAAAATGTATATAGACTGCTGCAAGGAGTTGTTTGAGGTACCGAACATCAAGGTACTGAAGAAGCTTTACAATTTAGAGGTTTCAGATGATGAAATTGTTGTGTCTGACTGTGACCTGCAAGATTTGTCTATTACACCGTTGATAAATGCACTGCATTTCCAAAAGTCATTTGCAATGCTTGACCTCTCTCACAATTTGTTAGGAAATGGAACAATTGAGAAGCTTCAAAAGGTGTTCACAGCATCAGGACAATCTTATGGTGGCTTAACTCTGGATTTACATTGCAATCGATTTGGCCCAACAGCATTGTTTCAGATTTGTGAATGTTCACTGCTATTTGCTCGACTGGAAGTGCTTAACATTTCTGGAAACCGTCTTACTGATGCATGTGGATCTTATCTTTCAACAATCTTAAAAAACTGTACAGCTCTTTGTAGCTTGAATATAGAGAACTGTAGTGTCACATCCAGAACTATTCAAAAAGTTGCAGATGCATTGGACTCTAGATCTGTACTTGCCCATCTATATATAGGATACAACAGCCCTGTATCTGGAAATGCTATAGTTAATCTTCTGTCCAAGCTTTCTACTCTGAAAAGGTTTTCTGAGTTGAACATGAGTGGTCTAAAACTAGGCAAACCAGTTGTCGATACCCTTTGCAAGCTTGCAGGGACCTTAACTTTATCAGGACTAATACTTGGAGGCACGGGTATTGGAACTGAAGCGGCAATAAAATTAGCAGAATCATTGCTCAAAGGGACTGAAGAGTTTGTGAAACTTGACCTATCATATTGTGGTCTAACATTGAACTTTGTTTTAAACACCAGTGTTAATTTTTTTTGTTCCATCCTAGAGCTGAATCTGGAAGGAAATCCTATCATGCCTGAGGGCAGCAATACTTTATTTTCTCTTCTTGTAAACCCACAGTGCTGTCTCAAAGTTTTGGTCCTTAGAAAGTGTCAACTTGGGCTTGCTGGAATTCTTCACATAATTGAGGCCCTGGCAGAGAACAGCTGCCTTGAGGAACTTAATCTTGCTGATAATTCTGTTCCAAAGGAAGCTTCTGCTCTACAATATGATTTATCGGTAAAAAGCTGCTCACAAAACCAGGAGCAGAAACTTGATACTATGAAAGTTGATGATAATCAAGAGGTCCCTTGCTCTCTAAACACTGCCTACCATGAGCTGGAAGTTGCTGATAGTGAAGCTATTCCAGTAGAAGCTGCTGCTTCTGGAATTGATGACAGCTGTGCCAGTTCATGCCAAAGAAATTCATCTCCTGAGTGCCATTTCACGCAACAGTTTTCAATTGCTATTGGTAAGGCAAAGAACTTGCAATTACTAGACCTTAGCAATAATGGTTTTTCCGCACAAGCTGCGGAAACATTCTATGGTTCGTGGATGACTTTACGACCCCTTTCAAGTCAGAAGCACGTTACTGAGCAGATTATTCATTTCTCAACGAGGGAAAATAAGTGCTGCAGAGTGAAACCTTGCTGCAAGAAAGTTTGA 3975 0.4244 MDADLKSAKAAYRNAKAEGNHREEARWANVIGDILKNQGEYIEALKWLRIDYDISLKHLPEKHLLPTCQSLGEMYLRLEHFSDALIYQKKHLELARDADDVVEQQRASTQLGRTYHELFSRSEHDHNSIRNAKKYFKCAMDLAVKLKENPPNSKSSFLKEYIDAHNNIGMLEMELDNLHEARKILTRGLEICDEEEVAEFDDGRSRLHHNLGNVYMELRDWNEARKHIQKDIVICNRIGHRQGEAKGYINLGEVHYRTQKYEDASAYYEKALGLAQSLEDEDALVRQIEQNIETVREAVKVMADIKKEEQSLKKLKRDIATARGTPNERKFLLQQNAVLERLVEKARMISAWEKHCEFAKEKKKIASELCDRQKLADSYLDVAESYQKLRKFNKAIKWYKKSWETHKNIGNLEGQALAKINIGNVLDSTEKWREALDAFQESYSIAVEADLPNVQLSALENMHYSNMIRFDDEDETRRLKLLIDKLKKAEEKEAEAKRMPEDFCSETDTEADDYLSNSGSDDFCFPKTISQSKTLTTEELKDDAPLMSLYQSIKGSSKKKAGHKESLTNSTKQDEQSPSSLKNQTSDHQTVVGRKRVRVILSDDDEVECSSRKDHACLVEDLPTYDAIKRKASPCKIQVISEYGSKCAIDVEESSSSFKCSSPHTATKTGRLSRSLSNNIVAEPDFPSGRHSRSLADTSKCDTDVSGKQNDIAQPMLHHSQNDFQQYITCRIGNDLIHVEATLCTTGDQLNIDSLKAVVACLYYLQFPTEKRSEGLLPIIEHIKSSGRDLESLETVEHLKEVLGNDMVEASVDGWIHKRLIKMYIDCCKELFEVPNIKVLKKLYNLEVSDDEIVVSDCDLQDLSITPLINALHFQKSFAMLDLSHNLLGNGTIEKLQKVFTASGQSYGGLTLDLHCNRFGPTALFQICECSLLFARLEVLNISGNRLTDACGSYLSTILKNCTALCSLNIENCSVTSRTIQKVADALDSRSVLAHLYIGYNSPVSGNAIVNLLSKLSTLKRFSELNMSGLKLGKPVVDTLCKLAGTLTLSGLILGGTGIGTEAAIKLAESLLKGTEEFVKLDLSYCGLTLNFVLNTSVNFFCSILELNLEGNPIMPEGSNTLFSLLVNPQCCLKVLVLRKCQLGLAGILHIIEALAENSCLEELNLADNSVPKEASALQYDLSVKSCSQNQEQKLDTMKVDDNQEVPCSLNTAYHELEVADSEAIPVEAAASGIDDSCASSCQRNSSPECHFTQQFSIAIGKAKNLQLLDLSNNGFSAQAAETFYGSWMTLRPLSSQKHVTEQIIHFSTRENKCCRVKPCCKKV 1324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00692 1324 Coils Coil 278 325 - -
Pumo6g00692 1324 FunFam tonsoku-like protein 314 469 - -
Pumo6g00692 1324 ProSiteProfiles TPR repeat profile. 245 278 IPR019734 GO:0005515
Pumo6g00692 1324 MobiDBLite consensus disorder prediction 683 703 - -
Pumo6g00692 1324 Pfam Tetratricopeptide repeat 376 446 - -
Pumo6g00692 1324 Pfam Tetratricopeptide repeat 205 276 - -
Pumo6g00692 1324 ProSiteProfiles TPR repeat region circular profile. 245 272 - -
Pumo6g00692 1324 ProSiteProfiles TPR repeat profile. 376 409 IPR019734 GO:0005515
Pumo6g00692 1324 Gene3D Tetratricopeptide repeat domain 311 468 IPR011990 GO:0005515
Pumo6g00692 1324 Gene3D Tetratricopeptide repeat domain 1 310 IPR011990 GO:0005515
Pumo6g00692 1324 FunFam Protein TONSOKU 827 1199 - -
Pumo6g00692 1324 SUPERFAMILY TPR-like 155 445 IPR011990 GO:0005515
Pumo6g00692 1324 MobiDBLite consensus disorder prediction 554 590 - -
Pumo6g00692 1324 MobiDBLite consensus disorder prediction 571 588 - -
Pumo6g00692 1324 Gene3D Ribonuclease Inhibitor 831 1224 IPR032675 -
Pumo6g00692 1324 Coils Coil 472 499 - -
Pumo6g00692 1324 PANTHER PROTEIN TONSOKU 2 1323 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Pumo6g00692 1324 FunFam Protein TONSOKU 1 313 - -
Pumo6g00692 1324 SUPERFAMILY TPR-like 8 196 IPR011990 GO:0005515
Pumo6g00692 1324 SMART tpr_5 162 195 IPR019734 GO:0005515
Pumo6g00692 1324 SMART tpr_5 376 409 IPR019734 GO:0005515
Pumo6g00692 1324 SMART tpr_5 416 449 IPR019734 GO:0005515
Pumo6g00692 1324 SMART tpr_5 245 278 IPR019734 GO:0005515
Pumo6g00692 1324 SMART tpr_5 65 98 IPR019734 GO:0005515
Pumo6g00692 1324 SMART tpr_5 205 238 IPR019734 GO:0005515
Pumo6g00692 1324 SMART LRR_RI_2 1101 1128 - -
Pumo6g00692 1324 SMART LRR_RI_2 875 902 - -
Pumo6g00692 1324 SMART LRR_RI_2 934 961 - -
Pumo6g00692 1324 SMART LRR_RI_2 962 989 - -
Pumo6g00692 1324 SMART LRR_RI_2 1130 1157 - -
Pumo6g00692 1324 SMART LRR_RI_2 1158 1186 - -
Pumo6g00692 1324 SMART LRR_RI_2 1046 1073 - -
Pumo6g00692 1324 SUPERFAMILY RNI-like 843 1292 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00692 - - gmx:100805682 2339.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00692 6 8697496 8707283 Pumo6g00692 6 8697496 8707283 ECH