Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00681 ATGAAGGGTGGGACGATTCAGATTAGCTGGCACGAGAGCAAACCCGTCTTAACCCTCGATTTTCACCCTCTCTCCGCCACTCTCGCCACCGCCGGCGCCGATTTCGACATCAAGTTTTGGTCAATAAAACCCGCCGGGTCACAGAAGAAGCTTCCCGTAGTTTCTTATCTTAGTAACCTCTCTTATCATAGCTCTGCAGTTAATGTTATTCGCTTCTCTTCTTCCGGTGAATTGCTAGCCTCTGGTGCTGATGGAGGGGACCTGATAATATGGAAGCTACATTCTACCGATACTGGTCAGACATGGAAGGTTCTCAAGATGTTACGATCTCATCACAAGGACATTCTGGACCTGCAGTGGTCTACCGATGCCACGTATATCATTTCTGGATCAGTTGATAATTGTTGCATTATATGGGATGTTAACAAAGGAACTAACCTTCAGACGTTGGATGCCCATGCACACTATGTTCAGGGGGTTGCATGGGACCCTCTAGGGAAATATGTTACTTCTCTTAGTTCTGATAGGACTTGCCGAATTTACATGAATAAGCCTCATAAATCAAAGGGCATTGAGAAAATCAATTATGTTTGCCAGCAAGTCATTTCCAAGGCAGATCAGCCATTATTAAAGAATTCTAAGGAGACAAAATTTCATCTCTTCCATGACGAGACATTGCCATCTTTCTTCAGAAGATTAGCATGGTCTCCTGATGGTTCATTTCTACTCGTGCCCGCAGGCTCTTACAAAATTAATACTGCATCTGAATCTGTGAATGCAGCTTACATATTTTCTAGAAAAGATCTTTCTAGGCCTGCTATACAGCTTCCCTGTGCAAGCAAAGCTGTTGTAGCTGTTCGATTCTGCCCCATATTTTTTAAACTTCGGGGAACAAACTCAGCTGGGTTATTTAAGCTCCCATATCGCATCATATTTGCTGTGGCCACTTTGAATTCATTGTACATTTATGACACTGAGAGCACCTCTCCGATAGCTGTATTAGCTGGCCTTCACTATGCCGCAATAACAGATATTACCTGGTCATCTGATGCTCATTATTTGGCATTGTCGTCACAAGATGGTTTCTGCTCTTTGGTGGAATTTGAAAATGACGAACTTGGATCACCATACTCTTTACCAGGTAACCAGCCTTCCTTTTTCTGCTGTCATATTGTCAGCACTCTGAAGTTTTTAATTTCCCTATTACATATTTTTCTAGAAGGAAAAGTCTCAAACAAGGATAGTAAGAGCACTGTACAGACAACCAATGACACTGTCACTGCACCAACTGGGAATGTTAGTGCTGTTCTAGCAGAGAGCAAGAAAATGGAATCAGAAGAGAAGGCTGATGACATGGTCATTGAAGCATCTGGCAATATTAGTGCTGTCATAACAGAAAGTGGGAAGACTGTAACACAAGAGAAGGCTGACATGATCAAATCAACTGGGAATTTAGCAGATGTTAGGAAAAATGAAGCAGAAGAGAAAGCTGTTGACATGGCCATTGAGGCAACAGGGAATGTTGAAGGGGTTATAGCAGATAGTAGGAAAAATGAAGCAGAAGATAAAACTGATGACATGGTCATTGAAACAACTGAAAGTATTGGTGCAGCTGAATTAGATAGAAGGAAAGCTGAACCAGAAGATAAGGCAGATGAAACAGCCAACTAA 1671 0.4219 MKGGTIQISWHESKPVLTLDFHPLSATLATAGADFDIKFWSIKPAGSQKKLPVVSYLSNLSYHSSAVNVIRFSSSGELLASGADGGDLIIWKLHSTDTGQTWKVLKMLRSHHKDILDLQWSTDATYIISGSVDNCCIIWDVNKGTNLQTLDAHAHYVQGVAWDPLGKYVTSLSSDRTCRIYMNKPHKSKGIEKINYVCQQVISKADQPLLKNSKETKFHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKINTASESVNAAYIFSRKDLSRPAIQLPCASKAVVAVRFCPIFFKLRGTNSAGLFKLPYRIIFAVATLNSLYIYDTESTSPIAVLAGLHYAAITDITWSSDAHYLALSSQDGFCSLVEFENDELGSPYSLPGNQPSFFCCHIVSTLKFLISLLHIFLEGKVSNKDSKSTVQTTNDTVTAPTGNVSAVLAESKKMESEEKADDMVIEASGNISAVITESGKTVTQEKADMIKSTGNLADVRKNEAEEKAVDMAIEATGNVEGVIADSRKNEAEDKTDDMVIETTESIGAAELDRRKAEPEDKADETAN 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00681 556 Pfam WD domain, G-beta repeat 10 41 IPR001680 GO:0005515
Pumo6g00681 556 Pfam WD domain, G-beta repeat 60 92 IPR001680 GO:0005515
Pumo6g00681 556 Pfam WD domain, G-beta repeat 103 140 IPR001680 GO:0005515
Pumo6g00681 556 Pfam WD domain, G-beta repeat 144 181 IPR001680 GO:0005515
Pumo6g00681 556 Gene3D - 213 401 IPR015943 GO:0005515
Pumo6g00681 556 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 544 IPR045145 GO:0006335
Pumo6g00681 556 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Pumo6g00681 556 MobiDBLite consensus disorder prediction 514 529 - -
Pumo6g00681 556 FunFam Chromatin assembly factor 1 subunit FAS2 4 250 - -
Pumo6g00681 556 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Pumo6g00681 556 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 95 - -
Pumo6g00681 556 MobiDBLite consensus disorder prediction 536 556 - -
Pumo6g00681 556 MobiDBLite consensus disorder prediction 513 556 - -
Pumo6g00681 556 SUPERFAMILY WD40 repeat-like 13 382 IPR036322 GO:0005515
Pumo6g00681 556 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 144 - -
Pumo6g00681 556 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
Pumo6g00681 556 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 43 IPR001680 GO:0005515
Pumo6g00681 556 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 181 IPR001680 GO:0005515
Pumo6g00681 556 Gene3D - 4 208 IPR015943 GO:0005515
Pumo6g00681 556 SMART WD40_4 143 182 IPR001680 GO:0005515
Pumo6g00681 556 SMART WD40_4 101 140 IPR001680 GO:0005515
Pumo6g00681 556 SMART WD40_4 327 367 IPR001680 GO:0005515
Pumo6g00681 556 SMART WD40_4 2 41 IPR001680 GO:0005515
Pumo6g00681 556 SMART WD40_4 53 92 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00681 25 181 Miscellaneous Gene Families AT5G08390 25.949 4.68e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00681 K10751 - gmx:100784411 970.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00681 6 8553542 8557689 Pumo6g00681 6 8553542 8557689 ECH