Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00543 ATGATTGCAATTTACAAGCTACTGAACGTTGCATTGCCCCCATTGTCACTAATTCTGCTCTCCATCTTCACGCTACCTTGGCTCTTATTCAAGCTGCTTATAAAGGACAAACTTGTAGCCGTGGCTGATAAGGCACGATCTCTGGGTTCCCCTGATGTTACCATCATTGCTGCTGATGTATCTAAGGTCCAAGACTGTGAGCGCTTTGTTGATGAAACCGTTCACTACTTTGGAAGACTGGATCATCTGGTAAATAATGCTGGAATTAGTGGTAAGCCTGTAGGTGTGGAGGATTGGCCTGATGTTTCCGAATTCACTCCAGTTATGGATATAAATTTCTGGGGAGCAGTTTATGGCACTTTATATGCAATCCCACATCTCAAAATTAACAAAGGCAGGATCATAGTGATTGCTTCAGGTTGCGGATGGTTCCCACTACCAAGGATGAGTATATATAATGCGAGCAAGGCAGCGGTTATAAACTTCTTTGAGACTCTGAGAATGGAACTTGGTTGGGCTATTGGCATAACAATCGCCACACCCAGTTTTCTCAAAACGGACCTTGCATTGAGGGCCATTGAGTATGAGGCTACTCTGGGAAGAATTCCAATGGGGTCAGCATGTGAATGTGCTATTGCCATAGTGGAAAGTGCATGTAGGGGAGATATGTACGTCACAAATCCATCGTGGATCAAAGTGTTGTTTCCTTGGAAGCATCTAGCATATGAGTATGCTAGAAGAGGAGCGCGTCTAGCACTTGTTGCCAGAAGAGAAAATCGACTCAAGGAAGTTGCTAACAATGCCAAATTGCTTGGATCCCCTGATGTTATCACCATCCCTGCAGATGTTTCAAGTGTCCAAGATTGCAAACGATTCGTTGACTCAACAATCAACCACTTTGGACAATTGGATCATCTGGTGAACAATGCAGGAGTAAGAGCTCTCGGCTTGTTTGAAAGCACCACTGATGTCACCAATTTTGCACCCGCAATGGACATTAACTTCTGGGGTTCCGCGTATGGCACTTACTTTGCAATCCCCCACCTCAGAAAAAGCAAAGGCAAAATTGTAGCAATAGCTTCCTGTACTGGATGGTTGCCAGCGAGCAAAGCAGCAGTGATCAGCTTATATGAGACTCTGAGAACTGAATTGGAAAGAGACATAGGAATAACTATAGTCACTCCAGGGCTGACTGATTCAGAAATGACACAAGGGAAGGTCCTATCCAAGGAAGGCAAGATGGTTTTTGATCAACTAATAAGAGATATGCAAGTTAGTTTGATGCCCATAAGATCAGGCACAGAAGCTGCCAAAGCAATTGTGAATAGCACTTGCCGTGGGGACTCGTTACTAGTCTCGGGGTCTTCGGAGAGGGACACAGTTAGCAAGAAAATCCTTGATCTATCAGGCTTAAAGAAATATCTGTATCCCAAGTCAGTGAGAAATCCCAATCTCAAACCCAGCTAA 1467 0.4424 MIAIYKLLNVALPPLSLILLSIFTLPWLLFKLLIKDKLVAVADKARSLGSPDVTIIAADVSKVQDCERFVDETVHYFGRLDHLVNNAGISGKPVGVEDWPDVSEFTPVMDINFWGAVYGTLYAIPHLKINKGRIIVIASGCGWFPLPRMSIYNASKAAVINFFETLRMELGWAIGITIATPSFLKTDLALRAIEYEATLGRIPMGSACECAIAIVESACRGDMYVTNPSWIKVLFPWKHLAYEYARRGARLALVARRENRLKEVANNAKLLGSPDVITIPADVSSVQDCKRFVDSTINHFGQLDHLVNNAGVRALGLFESTTDVTNFAPAMDINFWGSAYGTYFAIPHLRKSKGKIVAIASCTGWLPASKAAVISLYETLRTELERDIGITIVTPGLTDSEMTQGKVLSKEGKMVFDQLIRDMQVSLMPIRSGTEAAKAIVNSTCRGDSLLVSGSSERDTVSKKILDLSGLKKYLYPKSVRNPNLKPS 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00543 488 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 36 233 IPR036291 -
Pumo6g00543 488 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 IPR002347 -
Pumo6g00543 488 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 IPR002347 -
Pumo6g00543 488 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 IPR002347 -
Pumo6g00543 488 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 139 167 IPR020904 GO:0016491
Pumo6g00543 488 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 239 424 IPR036291 -
Pumo6g00543 488 PANTHER RETINOL DEHYDROGENASE-RELATED 238 449 - -
Pumo6g00543 488 Pfam short chain dehydrogenase 35 189 IPR002347 -
Pumo6g00543 488 Pfam short chain dehydrogenase 239 406 IPR002347 -
Pumo6g00543 488 Gene3D - 33 239 - -
Pumo6g00543 488 Gene3D - 240 466 - -
Pumo6g00543 488 PRINTS Glucose/ribitol dehydrogenase family signature 126 142 IPR002347 -
Pumo6g00543 488 PRINTS Glucose/ribitol dehydrogenase family signature 78 89 IPR002347 -
Pumo6g00543 488 PRINTS Glucose/ribitol dehydrogenase family signature 152 171 IPR002347 -
Pumo6g00543 488 PRINTS Glucose/ribitol dehydrogenase family signature 172 189 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00543 Pumo-Chr6 6766015 6781576 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00543 238 403 Acyl Lipid Metabolism Gene Families AT1G24360 27.684 3.96e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00543 K22418 - gmx:100787835 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00543 6 6766015 6781576 Pumo6g00543 6 6766015 6781576 ECH