Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00542 ATGATTGCAGTTTACAAGCTACTGAACGTTGCATTGCCCCCATTATCACTAATTTTGATCTCCATCTTCACGCTACCTTTGCTCTTATTCAAGCTGCTTATGTATGTAAAAAACTTAGTATACAAAGAAAACGTTGCAAGAAAAGTAGTGTTAATCACCGGAGCAGCCTCAGGGATTGGTGAGCAACTAGCTTATGAATATGGTAGACGAGGAGCAAAGCTGTCCCTGGTTGACATTAGAAAGGACAAACTTGTAGCCGTGGCTGATAGGGCACGATCTTTGGGTTCCCCTGATGTTACCATCATTGCTGCTGATGTATCTAAGCTCCAAGACTGTAAGCGCTTTGTTGATGAAACCGTTAACTACTTTGGAAGACTGGATCATCTGGTAAATAACGCGGGAATTAGTGGTAAGCCTGTAGGAGTGGAGGATTGGCGTGATGTTTCCGAATTCACTCCAGTTATGGACGTAAATTTCTGGGGAGCAGTTTATGGCACTTTATATGCAATCCCACATCTGAAAATCAACAAAGGCAGGATCATAGTGGTTGCTTCAGGTTGCGGATGGTTCCCACTACCAAGGATAAGTATCTATAATGCGAGCAAGGCAGCGGTAATAAACTTCTTTGAGACTCTGAGAATGGAACTTGGTTGGGCTATTGGCATAACAATCGCCACACCCGGTTTTCTCAAAACGGACCTTACATTGAGGGCTATGGAATATGAGCCTACTGTGGGAAGAATTCCAATGGGTTCAGCATGTGAATGTGCTACAGCCATAGTGGAAAGTGCATGCAGGGGAGATATGTACGTCACAAATCCATCGTGGGTCAAAATGTTGTTTCCTTGGAAGGTGCTTTGTCCTGAATTGGTGGACTGGGCCTGCCACTTGGTTTTTGGGCCTTCTCGAAACTCGTTTAGCATGAAAGGCAATCTGCACTTGCCCAGGATCCCAGAGCTTAAGGGATAA 969 0.4458 MIAVYKLLNVALPPLSLILISIFTLPLLLFKLLMYVKNLVYKENVARKVVLITGAASGIGEQLAYEYGRRGAKLSLVDIRKDKLVAVADRARSLGSPDVTIIAADVSKLQDCKRFVDETVNYFGRLDHLVNNAGISGKPVGVEDWRDVSEFTPVMDVNFWGAVYGTLYAIPHLKINKGRIIVVASGCGWFPLPRISIYNASKAAVINFFETLRMELGWAIGITIATPGFLKTDLTLRAMEYEPTVGRIPMGSACECATAIVESACRGDMYVTNPSWVKMLFPWKVLCPELVDWACHLVFGPSRNSFSMKGNLHLPRIPELKG 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00542 322 Gene3D - 34 302 - -
Pumo6g00542 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 44 298 IPR036291 -
Pumo6g00542 322 PRINTS Glucose/ribitol dehydrogenase family signature 172 188 IPR002347 -
Pumo6g00542 322 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Pumo6g00542 322 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Pumo6g00542 322 PRINTS Glucose/ribitol dehydrogenase family signature 218 235 IPR002347 -
Pumo6g00542 322 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Pumo6g00542 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Pumo6g00542 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Pumo6g00542 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 178 186 IPR002347 -
Pumo6g00542 322 PANTHER RETINOL DEHYDROGENASE-RELATED 46 299 - -
Pumo6g00542 322 Pfam short chain dehydrogenase 48 235 IPR002347 -
Pumo6g00542 322 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 185 213 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00542 Pumo-Chr6 6761118 6764723 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00542 43 251 Acyl Lipid Metabolism Gene Families AT1G24360 30.374 3.68e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00542 K22418 - gmx:100808990 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00542 6 6761118 6764723 Pumo6g00542 6 6761118 6764723 ECH