Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00513 ATGGAGGAAGCTCCCCCTTCAATTCCGGCGACAGCATCATGCTGGAGCAACGTGGTGAAGAAGCAGCCACCACCTCCACCGCAGCACACGGAGCGAGTATTGGTGGAAACCAGCGAATCCCCGAATGCCATATCCGTGGCCGTGGTGGACGCCAACGCCGTCATCGAATCCGGCGAAAAGCTCCACGGCCTCGCCGGCAAGTTCATCTCCATCCCCGAAGTCATGGAGGAAATCCGCGACCCCGTTTCCCGCCACAAACTCTCTTTCCTCCCCTTCACCATCCAAACCATGGAACCCTCCCCCGAATCCATCAACAAAGTTGTCAAATTTGCTAGGGCTACTGGTGACCTACAAACTCTTTCTGATGTTGATATCAAGCTCATAGCTCTGACTTATACATTGGAGGCTCAAATTCATGGGACAAAACAGCTCAGGGATGCCCCTCCTCCTGTTCAAATGGTTAATGTGAAGCGGTTGCCTGAGAAGGACATGCCTGGATGGGGTTCTAATGTGCCCAATTTGCAAGAGTGGGAGGCGTTGGAACAAGCCGAGGACGTGTTGAATTCCAATTCGAGGATCCTTCCTTTGCAGGACTTGAGCTTGAACATTGTTTCTCAAGATGAGCATTCTGTGGATGGTTCTGTGGAGCGTACAAGTGAAGCTGATTCGGGGATTCAGGAGGGCAGTCAAAATGATTCGACGAAGCCTAGGAGATATCTGCCAAAGAAAAAGGAGATAAACATTGAGGGGAAGACAATGGTGGCTGATGGAATTGATGCGTCGCAGGGAGAGGTTGATGACAATGCTGGTGATTGGATGCCGGCTGTTAGTCGAAGTACTCATAGGAGATATCTGAGAAGGAAAGCTAGACGTGAGTATAATGAGTCGATATCTAGTAACCAAGATCAGCAAGATTTGGAAGGAAATGTTGATGGTAGTGTTGGTGAAGATGCTAGTGCTTTACATCAGCCTGTTCATCAGAGGGATGAAGAACAACAAATAAAAAATGCTGTGTCTGAGGATGATCAGGTGGTAAAAGAAAACAAAGACAATGAAAGTATCTATGAAATTTTACAGCAAATGAGGCTGGAAGAAGGTTCACTTGAAGTTCTTGATGAGGAAAATAAACCAAGTTTATCTCCTGAAGAACTCCAGTCAGACAATGCTGGATTGGTGGAAACTGCATCTGATGGCAATGCAACTGTGGTCACTAAACCATGCAACAGTGAAACACATACAGTTGATGGCCAATCAAATCACTTGGAGACTGCTAGCCAGACCAGTGAAGCCGCTGATTTTTCATATGCAGATGATGATGGTAGTGAGCAAAGTTGGATGGTTAGATCTTTGTCTGAATCAAGTGTAGCCTGTGTAACTGGTGACTTTGCTATGCAAAATGTTCTTCTCCAAATGGGTTTGCGCTTACTGGCACCTGGAGGAACACAGATACACCAGCTGCACAGATGGATACTCAAGTGTCATGCCTGTTACACTGTTACTGCCGAGATTGGGAGGATTTTCTGTCCTAAATGTGGAAATGGTGGCACCTTAAGGAAGGTAGCTGTCACTGTTAATGAAAATGGAATAGTATTAGCAGCCCGTCGACCACGAGTTACATTACGTGGCACAAAGTATTCATTGCCTTTACCCCAAGGTGGAAGGGATGCAGTCACAAAGAACCTCATTCTCCGTGAAGATCAACTTCCTCAAAGGGTACTTTATCCTAAAACGAAGAAGAAAGCCAACAAGCAGGATGATGACTTCTTTACACCAGACAGTGTCTTCAGCCACCACACAGATAAGAAAGCTCCTTTCCAGCCTCCTGTAAGGAAAGCAATGGCAGTTTTCAGTGGGAGGAGAAATCCAAATGACAATCACTACTCACGCTCTAACCATAAGTAG 1902 0.4648 MEEAPPSIPATASCWSNVVKKQPPPPPQHTERVLVETSESPNAISVAVVDANAVIESGEKLHGLAGKFISIPEVMEEIRDPVSRHKLSFLPFTIQTMEPSPESINKVVKFARATGDLQTLSDVDIKLIALTYTLEAQIHGTKQLRDAPPPVQMVNVKRLPEKDMPGWGSNVPNLQEWEALEQAEDVLNSNSRILPLQDLSLNIVSQDEHSVDGSVERTSEADSGIQEGSQNDSTKPRRYLPKKKEINIEGKTMVADGIDASQGEVDDNAGDWMPAVSRSTHRRYLRRKARREYNESISSNQDQQDLEGNVDGSVGEDASALHQPVHQRDEEQQIKNAVSEDDQVVKENKDNESIYEILQQMRLEEGSLEVLDEENKPSLSPEELQSDNAGLVETASDGNATVVTKPCNSETHTVDGQSNHLETASQTSEAADFSYADDDGSEQSWMVRSLSESSVACVTGDFAMQNVLLQMGLRLLAPGGTQIHQLHRWILKCHACYTVTAEIGRIFCPKCGNGGTLRKVAVTVNENGIVLAARRPRVTLRGTKYSLPLPQGGRDAVTKNLILREDQLPQRVLYPKTKKKANKQDDDFFTPDSVFSHHTDKKAPFQPPVRKAMAVFSGRRNPNDNHYSRSNHK 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00513 633 Gene3D - 39 148 - -
Pumo6g00513 633 MobiDBLite consensus disorder prediction 217 235 - -
Pumo6g00513 633 Gene3D - 477 551 IPR036283 -
Pumo6g00513 633 MobiDBLite consensus disorder prediction 411 432 - -
Pumo6g00513 633 SUPERFAMILY NOB1 zinc finger-like 483 546 IPR036283 -
Pumo6g00513 633 MobiDBLite consensus disorder prediction 583 609 - -
Pumo6g00513 633 MobiDBLite consensus disorder prediction 210 237 - -
Pumo6g00513 633 MobiDBLite consensus disorder prediction 293 312 - -
Pumo6g00513 633 PANTHER RNA-BINDING PROTEIN NOB1 34 632 IPR039907 -
Pumo6g00513 633 CDD PIN_Nob1-like 48 159 IPR033411 -
Pumo6g00513 633 MobiDBLite consensus disorder prediction 1 31 - -
Pumo6g00513 633 MobiDBLite consensus disorder prediction 583 605 - -
Pumo6g00513 633 FunFam 20S-pre-rRNA D-site endonuclease NOB1 38 158 - -
Pumo6g00513 633 MobiDBLite consensus disorder prediction 411 435 - -
Pumo6g00513 633 Pfam Nin one binding (NOB1) Zn-ribbon like 483 553 IPR014881 -
Pumo6g00513 633 Pfam PIN domain of ribonuclease 48 134 IPR033411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00513 Pumo-Chr6 6352534 6355708 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00513 K11883 - gmx:100800291 1131.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00513 6 6352534 6355708 Pumo6g00513 6 6352534 6355708 ECH