Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00491 ATGGCGTTATCATTTCTTCGTGTTCCACACTTGGTTTGTCCTACTCCTACACCTGCAACTACTACATCCACTGTAAAGTTGCAACACTTTCGCAAACCTTCTACTTTCACACCCTTCTTCCGTCCCCTTTCGTATCCCTTCGTCCACTTTCGGGCTCCGCGGGCCATTGGGCCGGATGGGAAGTTCTACCCAAGCCCAGCCGACGACGACCCACCGGAAGCCGATGAGGATTCCTCCCACGGCATCTCCACCTTCCAACAAATCCAGCGCCAAGCCGAACGCGCGCGCCAAGCCGAAGAAGAAGACTACAAGAAAAACCAATCCACATATCTTGCCGCCATCGCCGACGTCGAAGACGCCCCCGACAACGCCCCCTTCGACTCCTCCGAGGACGACCTCTTCGGCGAAATCGACAAAGCCATCGCTCTCAAGCGCAAAGAATTCGTCTCCCAAGGCCTTCTCGAACCCAATCCCCCGAAGCAAGACCAACTCCCCGTCGCCGTCGACGAGCTCCAACCCGACGAGCTCGGCGATTTGGAGGAAATCGAACGTCTCCAGGGACTCACCGGTAACGGTAACGGTAACGGAGGCTCGACCGAATCTCCGTTTGAATTCGATTTTGACAGTTACGGAAAAAGTAAGGTTAGGATTGTAGAAGGAAAGTTTAAGATGAGTTTGGCTGAGCTTTTAGACGAGAGCAAGGTCGTGCCGGTGTCGGTTTCCGGTGATTTGGAAATCGAAATCACCGGAATTCAGCACGATTCGCGGATTGTTAGTTCCGGTGATTTGTTTGTGTGTTGCGTGGGGCGAAGAACCGATGGACATTTGTTTTTGTCTGAGGCTGATAAGAGAGGTGCGGTTGCGGTTGTGGCTAGTAAAGAGATTGATATTGAGGATACTTTGGGGTGTAAGGCTTTGGTTATTGTGGAAGATACTAATGCTGTTCTTCCTGCTTTGGCTGCTTCGTTTTATAAACAACCTTCGACCAAAATGGCTGTGATTGGGATAACTGGGACTTATGGCAAAACGACCACCACCTGTTTGATTAAAAGTTTGTATGAAGCCATGGGGCTGCGCACCGGGATGTTGAATTCGGTTGCTTCTTATGTCCATGGGGATAATAAGTTGGACCTGGGTAACGCGGTGCCGGATGCTGTTTTGGTTCAGAATTTGATGGCAAAGATGATTCACAATGGGACTGAGGCAGTGGTCATGGAGGTGGGTGCTAATGGGTTGGGGGATGGGAAGTATGATGAGGTTGATTTTGATATTGCGGTTTTCACTAATTTGAGTCAGGAGGAGGAGGAGGGGGATAGGGACGCGCAGGCTAAGTTGTTCTCGAGAATGGTGGATCCGGAGAGGCACAGGAAGGTTGTTAACATTGATGATCCGAATGCACCCTTTTTTGTGTCGCAGGGGAGCCAGGAAGTTCCTGTTGTGACGTTTGCCATGGAGAATAAGGAGGCAGATGTTCATCCCTTGAAGTTTGAGCTTTCTTTGTTTGAGGCGCAGGTGTTGGTTAATACTCCCACGGGGATACTGGAGATTTCGTCGGGTTTGCTTGGGAAGCATAATATTTACAACATCCTTGCTGCTGTGGCAGTTGGGATTGCTGTTGGGGCGCCTTTGGAGGACATTGTTAGAGGGATTGAAGAGGTTGATGCAGTTCCTGGGAGGTGTGAGTTGATTGATGAGGAACAAGCGTTTGGGGTGATAGTGGACTATGCCAGTACTCCTGATGCATTGTCTAGATTACTTGATTCTGTAAGAGAGCTTGGACCTCGCAGGATCATAACTGTCATTGGATGCTGTGGTGAGGGCGACAGGGCTAAGAGGCCTGTGATGACCAAGATAGCAACAGATAAAAGTGAAGTGACCATGCTGACATCTGATAATCCCAAGAATGAAGATCCATTGGATATATTGGATGATATGTTGGCTGGGGTAGGATGGACAATGCAGGACTACCTGAAATATGGAGAGAATGACTATTATCCACCTCTTCCAAATGGTCATAGACTTTTTCTCCATGACATTAGGAAGGTAGCTGTGCGAGCTGCAGTTGCAATGGGAGAGGAGGGCGATGTGGTTGTGGTTGCTGGCAAAGGCCATGAAACATATCAATTAGAAGGTGATAAGAAGGAATTCTTTGATGATCGAGAAGAGTGCAGAGAGGCATTGCAGTATGTTGATGAGCTTCACCAAGCTGGAATAGATACAAGTGAATTTCCATGGAGGTTACCAGAGAGCCATTGA 2256 0.4902 MALSFLRVPHLVCPTPTPATTTSTVKLQHFRKPSTFTPFFRPLSYPFVHFRAPRAIGPDGKFYPSPADDDPPEADEDSSHGISTFQQIQRQAERARQAEEEDYKKNQSTYLAAIADVEDAPDNAPFDSSEDDLFGEIDKAIALKRKEFVSQGLLEPNPPKQDQLPVAVDELQPDELGDLEEIERLQGLTGNGNGNGGSTESPFEFDFDSYGKSKVRIVEGKFKMSLAELLDESKVVPVSVSGDLEIEITGIQHDSRIVSSGDLFVCCVGRRTDGHLFLSEADKRGAVAVVASKEIDIEDTLGCKALVIVEDTNAVLPALAASFYKQPSTKMAVIGITGTYGKTTTTCLIKSLYEAMGLRTGMLNSVASYVHGDNKLDLGNAVPDAVLVQNLMAKMIHNGTEAVVMEVGANGLGDGKYDEVDFDIAVFTNLSQEEEEGDRDAQAKLFSRMVDPERHRKVVNIDDPNAPFFVSQGSQEVPVVTFAMENKEADVHPLKFELSLFEAQVLVNTPTGILEISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYASTPDALSRLLDSVRELGPRRIITVIGCCGEGDRAKRPVMTKIATDKSEVTMLTSDNPKNEDPLDILDDMLAGVGWTMQDYLKYGENDYYPPLPNGHRLFLHDIRKVAVRAAVAMGEEGDVVVVAGKGHETYQLEGDKKEFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00491 751 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 556 728 IPR036615 GO:0009058|GO:0016881
Pumo6g00491 751 SUPERFAMILY MurD-like peptide ligases, catalytic domain 307 567 IPR036565 GO:0005524|GO:0009058
Pumo6g00491 751 PANTHER MUR LIGASE FAMILY MEMBER 179 737 - -
Pumo6g00491 751 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 224 727 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Pumo6g00491 751 Gene3D - 225 325 - -
Pumo6g00491 751 Pfam Mur ligase middle domain 336 535 IPR013221 GO:0005524|GO:0009058|GO:0016881
Pumo6g00491 751 Gene3D - 561 738 IPR036615 GO:0009058|GO:0016881
Pumo6g00491 751 NCBIfam UDP-N-acetylmuramyl-tripeptide synthetase 246 728 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Pumo6g00491 751 FunFam UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 561 734 - -
Pumo6g00491 751 Pfam Mur ligase family, glutamate ligase domain 556 639 IPR004101 GO:0009058|GO:0016881
Pumo6g00491 751 Gene3D - 327 559 IPR036565 GO:0005524|GO:0009058
Pumo6g00491 751 MobiDBLite consensus disorder prediction 59 82 - -
Pumo6g00491 751 Pfam Mur ligase family, catalytic domain 247 324 IPR000713 GO:0009058|GO:0016881
Pumo6g00491 751 SUPERFAMILY MurE/MurF N-terminal domain 224 327 IPR035911 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00491 - - gmx:100776096 1350.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00491 6 6153812 6157912 Pumo6g00491 6 6153812 6157912 ECH