Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00482 ATGTCTTCCCCAAGCAAACGCCGAGACATGGACTTGATGAAGCTGATGATGAGTGATTACAAGGTGGAGATGATCAACGATGGCATGCAAGAGTTCTTTGTGGAATTCCACGGACCCAAAGACAGTCTTTATCAAGGTGGTGTGTGGAAGGTAAGGGTGGAGCTACCTGATGCTTATCCTTATAAGTCTCCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTTGATGAGATGTGTGGTTCTGTTTGCTTAGATGTTATTAACCAGACTTGGAGTCCCATGTTTGACCTTGTTAATGTGTTTGAGGTATTTCTTCCTCAACTTCTTCTGTACCCCAATGCATCAGATCCATTGAATGGTGATGCTGCTGCCTTGATGATTCGAGATCATGCTACATATGAACAAAGAGTCAAAGAATATTGTGAAAAATATGCTAAGCCAGAAGATGTTGGAGCTGCACAGGAGGAAGATTCTAGTGATGATGATGAGCTGAGTGAAGATGATTATGCCTCTAGTGATGATGCCATTGTCGGCCAACCTGATCCTTAG 555 0.4234 MSSPSKRRDMDLMKLMMSDYKVEMINDGMQEFFVEFHGPKDSLYQGGVWKVRVELPDAYPYKSPSIGFVNKIFHPNVDEMCGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNASDPLNGDAAALMIRDHATYEQRVKEYCEKYAKPEDVGAAQEEDSSDDDELSEDDYASSDDAIVGQPDP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00482 184 CDD UBCc 10 143 IPR000608 -
Pumo6g00482 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 136 - -
Pumo6g00482 184 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Pumo6g00482 184 SMART ubc_7 4 148 - -
Pumo6g00482 184 MobiDBLite consensus disorder prediction 156 172 - -
Pumo6g00482 184 FunFam Ubiquitin-conjugating enzyme 5, E2 1 159 - -
Pumo6g00482 184 Gene3D Ubiquitin Conjugating Enzyme 1 160 IPR016135 -
Pumo6g00482 184 MobiDBLite consensus disorder prediction 149 184 - -
Pumo6g00482 184 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Pumo6g00482 184 SUPERFAMILY UBC-like 4 148 IPR016135 -
Pumo6g00482 184 Pfam Ubiquitin-conjugating enzyme 11 142 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00482 Pumo-Chr6 6034475 6037805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00482 3 150 Miscellaneous Gene Families AT3G17000 24.074 6.61e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00482 K10576 - gmx:100791133 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00482 6 6034475 6037805 Pumo6g00482 6 6034475 6037805 ECH