Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00479 ATGCACGAATACAACCTTACTCCGCACTCTCTGTATGCGGCTGTTTCAGTTGGTCTGGAAACAGAAACAGTCATAAGTGTTTTGAACAAGTTATCCAAGACCAAGCTTCCCAAAGAGATGGTTAAGTTTATACACGATTCTACTGCAAATTATGGCAAAGTGAAACTCGTGCTCAAGAAGAATCGATACTTTATTGAATCTCCGTTTCCAGAGGTATTGAAGACATTGCTCAGGGATGAAACTATATCTCGAGCAAGGCTTATTTCTGAGAATGTAAATGGAGATGGATTTACAATCAGCAAAGCAGCAGGTGAAATTGAAGGCACTCATGATGAGTTGCTAAATGAAGCAGAAGTGGCAGCGGTTGCAGAAGAGAAAGAAGCCCATTCATTTGAAATTGATCCTTCTCAGGTTGAAAATGTAAAGCAACGCTGCTTGCCAAATGCCTTGAATTATCCCATGTTGGAGGAGTATGACTTCAGAAATGATACGGTGAACCCAGACCTTGACATGGAACTAAAGCCTCAAGCACAACCACGGCCATATCAAGAGAAGAGCCTTAGTAAAATGTTTGGAAATGGTAGAGCAAGATCTGGTATTATAGTTCTACCCTGTGGTGCTGGAAAGTCCTTAGTTGGTGTGTCTGCAGCTTGCCGGATAAAAAAAAGCTGCCTCTGTTTGGCAACAAATGCTGTTTCTGTAGATCAGTGGGCTTTCCAATTTAAACTATGGTCAACTATCCGAGAAGAACAAATATGTCGTTTCACGTCTGATAGCAAAGAGAGATTCCGTGGTAATGCTGGAGTTGTTGTGACAACATATAATATGGTTGCTTTTGGTGGTAAACGGTCTGAAGAATCTGAAAAGATCATTGAAGAAATAAGAAACAGAGAATGGGGATTGCTCCTCATGGATGAGGTGCATGTGGTTCCGGCCCATATGTTTCGTAAAGTCATCAGTATCACTAAATCTCATTGTAAACTTGGGCTCACAGCTACACTTGTCAGAGAGGATGAAAGGATTACAGATCTGAACTTCCTGATTGGTCCCAAGCTGTATGAGGCAAATTGGTTAGATCTAGTAAAAGGTGGATTTATTGCAAATGTACAGTGTGCTGAAGTATGGTGTCCGATGACAAAAGAGTTTTTTGCTGAGTATTTGAAGAAAGAGAACTCCAAGAAGAGACAGGCACTTTACGTGATGAACCCTAATAAGTTCAGAGCATGTGAGTTTCTCATAAATTTCCATGAAAGGACACGTGGTGATAAAATTATAGTCTTTGCTGATAATCTGTTTGCTCTCACTGAGTATGCCATGAAACTCCGCAAACCAATGATATATGGTGCTACAAGCCATGTTGAGAGGACAAAAATTTTGCAAGCATTCAAAACTAGCAAAGATGTAAATACTATATTTCTTTCCAAGGTGGGTGACAACTCAATTGATATTCCTGAAGCAAATGTAATAATTCAGATATCTTCACATGCTGGTTCAAGGCGACAAGAAGCCCAGCGTCTGGGTCGTATTCTTAGGGCAAAGGGAAAGCTTGAGGATAGGATGGCAGGGGGCAAGGAGGAGTATAATGCATTTTTTTATTCCCTTGTTTCAATTGATACCCAGGAGATGTATTACTCAACTAAGAGGCAGCAATTTTTAATTGATCAGGGTTACAGCTTTAAGGTAATTAATAGCTTGCCTCCTCCTGATGAAGGGCCTAATTTGAGCTATTATCATCTTGAAGATCAATTGGCACTTCTTGGAAAGGTGCTGAGTGCTGGTGATGATGCAGTTGGATTAGAGCAACTAGATGAAGATGCAGATGAAATAGCTCTTCATAATGCCCGTCGTTCTCAAGGATCCATGAGTGCAATGTCAGGCGCAAAAGGGATGGTGTATATGGAGTACAGTACTGGGCGTAACAAAGGCCAAGGACAGATCAAGAGCAAGCCGAAAGATCCAACTAAGAGACACTTCTTGTTTAAAAGAAGATATGGCGCAACCTAA 2004 0.4097 MHEYNLTPHSLYAAVSVGLETETVISVLNKLSKTKLPKEMVKFIHDSTANYGKVKLVLKKNRYFIESPFPEVLKTLLRDETISRARLISENVNGDGFTISKAAGEIEGTHDELLNEAEVAAVAEEKEAHSFEIDPSQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIREEQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKRQALYVMNPNKFRACEFLINFHERTRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSIDTQEMYYSTKRQQFLIDQGYSFKVINSLPPPDEGPNLSYYHLEDQLALLGKVLSAGDDAVGLEQLDEDADEIALHNARRSQGSMSAMSGAKGMVYMEYSTGRNKGQGQIKSKPKDPTKRHFLFKRRYGAT 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00479 667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 288 610 IPR027417 -
Pumo6g00479 667 CDD SF2_C_XPB 371 535 - -
Pumo6g00479 667 Gene3D - 361 601 IPR027417 -
Pumo6g00479 667 FunFam Probable DNA repair helicase RAD25 169 360 - -
Pumo6g00479 667 Pfam ERCC3/RAD25/XPB C-terminal helicase 360 608 IPR032438 -
Pumo6g00479 667 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 407 573 IPR001650 -
Pumo6g00479 667 SMART ultradead3 175 356 IPR014001 -
Pumo6g00479 667 PANTHER RAD25/XP-B DNA REPAIR HELICASE 1 635 - -
Pumo6g00479 667 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 190 352 IPR014001 -
Pumo6g00479 667 PRINTS Xeroderma pigmentosum group B protein signature 191 213 - -
Pumo6g00479 667 PRINTS Xeroderma pigmentosum group B protein signature 422 444 - -
Pumo6g00479 667 PRINTS Xeroderma pigmentosum group B protein signature 616 635 - -
Pumo6g00479 667 PRINTS Xeroderma pigmentosum group B protein signature 160 186 - -
Pumo6g00479 667 PRINTS Xeroderma pigmentosum group B protein signature 469 487 - -
Pumo6g00479 667 PRINTS Xeroderma pigmentosum group B protein signature 48 67 - -
Pumo6g00479 667 PRINTS Xeroderma pigmentosum group B protein signature 402 417 - -
Pumo6g00479 667 PRINTS Xeroderma pigmentosum group B protein signature 298 318 - -
Pumo6g00479 667 PRINTS Xeroderma pigmentosum group B protein signature 488 513 - -
Pumo6g00479 667 PRINTS Xeroderma pigmentosum group B protein signature 364 386 - -
Pumo6g00479 667 PRINTS Xeroderma pigmentosum group B protein signature 525 548 - -
Pumo6g00479 667 FunFam Putative DNA repair helicase rad25 361 603 - -
Pumo6g00479 667 CDD DEXHc_XPB 171 340 - -
Pumo6g00479 667 Gene3D - 169 360 IPR027417 -
Pumo6g00479 667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 354 IPR027417 -
Pumo6g00479 667 NCBIfam DNA repair helicase rad25 1 662 IPR001161 GO:0003678|GO:0006289|GO:0006367
Pumo6g00479 667 SMART helicmild6 435 513 IPR001650 -
Pumo6g00479 667 Pfam Helicase conserved C-terminal domain 1 88 IPR032830 -
Pumo6g00479 667 Pfam Type III restriction enzyme, res subunit 178 334 IPR006935 GO:0003677|GO:0005524|GO:0016787
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00479 K10843 - gmx:100789550 1286.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00479 6 5992435 5999811 Pumo6g00479 6 5992435 5999811 ECH