Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00458 ATGAAGTGCAGATCGGTGGCGTGCATATGGTCCGGCACGCCCTTCCCTCACCGCGTCACCGCCGTCGCCGCTTTAACCGAACCTCCGACGCCGACCTTTTACACCGCCGGATCCGATGGCTCCGTCATCTGGTGGACCCTCTCCAATTCCACTACCCCACCGCAACTTAAGGCGGTGGGCGTGTTGTGCGGTCACGCCGCACCGATCACCGATCTCGCCGTTTGTAGTCCCGTCGCAGATGCAGAAAACTGTTACGGTTCAAGTGGAAGTAAGTCAAGTGCGTTGATAAGTGCGTGTTGCGATGGTTTTTTGTGTGTGTGGAGCAAAAACAGTGGTCATTGCCGGTGCAGGAGGAAATTGCCGCCTTGGGTTGGCACTCCCCGCATAATTCGAACTTTGCCTTCAACACCGAGATATGTGTGTATAGCGTGTTCTTTCGAGGCTAGTGAAGGAGTAATTGATAGAGAAACTCAGGCTAGGAAGCCTCCTAAGTGCACTATTCTTATTGTGGACACTTATTCGCTTTCCATTACTCAGACTGTGTTTCATGGAAGTCTATCCATTGGTCCTGTTAGGTTTATGGCACTAGTGTTGGGTGATGACGAGAAGAGGAATTCGGTTTTTGTGGCTGATTCAGCTGGGAGCCAGCAGACGGTTTTGATATCGGAGGATCGAGGGGAAAGCTTGGCGAGTTCGCATGGAGATATAGGTCAATTGGAGAGTGTTTTTTGCTGTGAGGGATTGAATGGCGAGGAGCAGATTGTTTCGGTTCTGACGTATGGGAATGTTGTTGCTTTTATATTGAAAGATCGGTGTGTTTTTAGGTTGTTGAATGGTGATAGTGTGATTGGAGAGGTTTCTTTTGAGGACAGTGTATTCGGTTTGGATCGGGGTTCTACTCAAATGTATGCCATTGGTGGTATTTTTCTTGAAAGTGATGATGTGGGGAATGTGTGCAATGCCAATGAATATGGAAACTCGGTTACAGTACAATTTGTTGTGTGGAATAATGTAGGCTATGCAGTTATATATAATGTGTTGTATCAGAATGATGTTTTTCAATGTGAACCTCATTCTGAGATTCCTGGTACTCATTATCAACCTGATATGAGATTATCTATTTTTTTCCAACAAGTAAATCAATATCTTGTGTGCATCAAATCAGTTTGCTTTAATTATGAGGAGCCTTTACTATGGAGACCGCTTGCCACAATCTGGTCACTGCATGATTTTGATGATGAACCTGGTATATTGTACCGTCAATGCAGAATGATCAGTGATGGTGTATCTTTCATGGACTGGTTTGAGAAATCAACTCAGCTCAAGGGACTGGATGGTCTAGAGACTACGCCTACTTTTGGTGTGGGTCTAAGTTCTGATGATGTAGACAACACACATGTGGATAGCATAAGTAATTATTATGCTTACAAGGGGAAGGTAGTTTCTTCTTCCATGATTATATCTGAGAACCTCTTTACTCCTTATGCTGTTGTATTTGGTTTTTTAAGTGGAGAAATAGAGGTTGTAAGATTTGATCTGTTTCAAGGGTTTTGCTTGGATGATGCAAGTTCCAATCCTGATGAAAAATCAACTGCATGCAAACAGTACTTCTCAGGACATACAGGTGCTGTACTTTGTTTGGCAGCACATCAAATGATGGGTAGTGCCAAAAGCTGGACTTTTAAACGGGTTTTGGTGTCTGGAAGTATGGATTGCACGATTCGTATATGGGATCTTGACGCTGGCAGTCTTATTATGGTAATGCATCATCACGTGGTTCCTGTGCGTCAAATTATTCTTCCCCCATCTTTGACTGCGCATCCATGGAGTGATTGCTTCCTTTCAGTTGGAGAGGATGCATGTGTTGCTCTTGTTTCTCTTGAGACTCTGCGAGTGGAGAGAATGTTTCCTGGACACGCAAACTATCCTTCTAAAGTTTTATGGGATGGAGCAAGAGGTTATATTTCCTGTCTCTGTCAAGCACATTACGGAACTTCTGATGCTACCGATGTATTATACATTTGGGATGTAAAGACAGGTTCACGTGAGCGAGTCCTACGTGGGACAGCTGCACATTCAATGTTTGATCATTTTTGTAAAAGCATCAGCATGAATTCCATATCTGGCACATTGCTGAATGGAAATACATCAGTCTCTTCATTACTTCTTCCAATAGTTGATGATGCGAGGTTCTCTAACTCCCCCTTAAATCGGTCAGACAACTTGCTTACTTCATCAAGGTCGTCACCAAATATTTCAAATATGACTGAGCTGAATTCTTCCAAAACAAATGCAGGTAAAGGAAATTCAGTGAAGCCGAATTCGTCCTCTTTGATTGGTCTTTTGAGTAGCAAGCTTCCTATGAAATGCTCTTGCCCATTCCCAGGGATTGTGTCTCTGTGTTTTGATCTTGCATCATTGATGCTCTCTTATCAAAAGAATGAGTCCATGGAAAATGGTGGTGGCAAGCCAGTGAATATCAATTTGAAGCAGCAGGGAGTTCCGGAGCAAAATCCCAGCTACCATAATCCAGAAACTGTAGAGGGGCATGACTTGGTTAGCCTATTTGAAGAATACTTACTTCGATATTGCTTGTCATTTCTACATTTATGGAGTGTAGACAGAGAGCTTGATAATTTGCTGATAAGTGACATGAAGCTGAGGAGACCAGAAAATTTTATAGTAGCTTCTGGTCTGCAGGGGGATAAAGGGTCATTGACATTGACGTTTCCTGCTCAGAGTGCTACTCTTGAGCTTTGGAAATCATCATCTGAGTTTTGTGCAATGAGGTCATTGACGATGGTGTCCCTTGCCCAACGTTTGATTAGCTTGTCTCACACTGGTTCAGCAGCCAGCAGTGCTTTAGCAGCCTTTTATACTCGGAATTTCCTGGAAAATTATCCAGATGTGAAGCCACCTTCATTACAGCTCTTGGTGGCTTTTTGGCAAGATGAAAGTGAACATGTGCGTATGGCTGCACGCTCTATATTTCATTGTGCTGCCTCTCATGCTATTCCTCTACCTCTATGCAATTCAAAACCCACCGAGTCAAACAATATAAGTTCCCAAACTGGAAGTATAGACAAACATCTAGGAAATATGACAGAAGAAAGTATATCTCCTAAGGCAGAAAAACATGGAATTTCCCAAGATGAGGAATCCAAGATACTTGCTTGGTTAGAATCATTTGAAGTGCAAGATTGGATTTCTTGTGTTGGTGGAACAAGTCAGGATGCAATGACATCTCACATTATTGTTGCTGGTGCACTGGCTATCTGGTATCCTAGTCTTGTAAAGCCAAGTCTTGCCATGCTAGTTGTTCACCCGTTAATGAAGTTGGCTATGGCCATGAATGAGAAGTACAGCTCCACTGCTGCTGAGCTCCTTGCAGAGGGCATGGAAAGTACATGGAAAGAATGCATTGTCTCTGAGATTCCTCGTCTGATTGGGGATATTTTTTTCCAAGTAGAGTTGAGTGGTCCATCTTCCAAGTCAGTGAAAGAAATTTCAGATGCATCTTTTTCTATTAAACAGACTTTGGTGGAGGTTCTTCTTCCAAGTTTAGCTATGGCTGATATACCAGGCTTTTTGACTGTGATTGAAAGTCAAATTTGGTCTACTGCATCTGATTCACCTGTCCACATGGTATCCTTGTTGACTCTTATAAGGATCATGCGTGGTTCTCCAAAGAATTTGGCTCAATACCTTGACAAGGTGGTCAACTTCATTTTACAGACTATAGATCCTAGCAACTCAGTCATGCGGAAGGCATGCTTCCAGAGTTCAATGACAACTTTAAAGGAAGTTGTACGTGTATATCCCATGGTGGCTGTCAATGATTCATGGTCCAAACTAGCAGTTGGAGATGTGGTTGGAGAAATTAACAATGCAAGCATTAGGGTTTATGATATGCACAGTGTGACAATGATAAAGGTTTTGGATGCAAGTGGGCCTCCTGGACTTCCAACTCTGCTCCCAGTAGCAACATCAGGAACAATGTTGACTACGGCAATTTCAGCACTGAGCTTTTCACCAGATGGAGAGGGGCTGGTTGCTTTTTCTGAAAATGGGCTACTGATTAGATGGTGGTCAGTGGGATCTTTCTGGTGGGAGAAACTAAGCCGGAACTTTGTTCCTGTCCAGTGCACCAAACTAATCTTTGTTCCTCCTTGGGAAGGATTTTCACCTAATTCATCCAGGTCAAGCATAATGGCCAATATTTTGGAAACTGACAGGCAGCTGAACTTTCAGGATAATGCAAGGGATTCAAATCACGGGGACAGTCCGAAACACTTGCTTCATAATTTGGACCTCTCCTATAGACTAGAATGGGCTGAGGGGCGGAAAGTACTTCTTACAAGGCATGGTCATGAATTGGGCACTTTTCAGCTATAA 4395 0.4325 MKCRSVACIWSGTPFPHRVTAVAALTEPPTPTFYTAGSDGSVIWWTLSNSTTPPQLKAVGVLCGHAAPITDLAVCSPVADAENCYGSSGSKSSALISACCDGFLCVWSKNSGHCRCRRKLPPWVGTPRIIRTLPSTPRYVCIACSFEASEGVIDRETQARKPPKCTILIVDTYSLSITQTVFHGSLSIGPVRFMALVLGDDEKRNSVFVADSAGSQQTVLISEDRGESLASSHGDIGQLESVFCCEGLNGEEQIVSVLTYGNVVAFILKDRCVFRLLNGDSVIGEVSFEDSVFGLDRGSTQMYAIGGIFLESDDVGNVCNANEYGNSVTVQFVVWNNVGYAVIYNVLYQNDVFQCEPHSEIPGTHYQPDMRLSIFFQQVNQYLVCIKSVCFNYEEPLLWRPLATIWSLHDFDDEPGILYRQCRMISDGVSFMDWFEKSTQLKGLDGLETTPTFGVGLSSDDVDNTHVDSISNYYAYKGKVVSSSMIISENLFTPYAVVFGFLSGEIEVVRFDLFQGFCLDDASSNPDEKSTACKQYFSGHTGAVLCLAAHQMMGSAKSWTFKRVLVSGSMDCTIRIWDLDAGSLIMVMHHHVVPVRQIILPPSLTAHPWSDCFLSVGEDACVALVSLETLRVERMFPGHANYPSKVLWDGARGYISCLCQAHYGTSDATDVLYIWDVKTGSRERVLRGTAAHSMFDHFCKSISMNSISGTLLNGNTSVSSLLLPIVDDARFSNSPLNRSDNLLTSSRSSPNISNMTELNSSKTNAGKGNSVKPNSSSLIGLLSSKLPMKCSCPFPGIVSLCFDLASLMLSYQKNESMENGGGKPVNINLKQQGVPEQNPSYHNPETVEGHDLVSLFEEYLLRYCLSFLHLWSVDRELDNLLISDMKLRRPENFIVASGLQGDKGSLTLTFPAQSATLELWKSSSEFCAMRSLTMVSLAQRLISLSHTGSAASSALAAFYTRNFLENYPDVKPPSLQLLVAFWQDESEHVRMAARSIFHCAASHAIPLPLCNSKPTESNNISSQTGSIDKHLGNMTEESISPKAEKHGISQDEESKILAWLESFEVQDWISCVGGTSQDAMTSHIIVAGALAIWYPSLVKPSLAMLVVHPLMKLAMAMNEKYSSTAAELLAEGMESTWKECIVSEIPRLIGDIFFQVELSGPSSKSVKEISDASFSIKQTLVEVLLPSLAMADIPGFLTVIESQIWSTASDSPVHMVSLLTLIRIMRGSPKNLAQYLDKVVNFILQTIDPSNSVMRKACFQSSMTTLKEVVRVYPMVAVNDSWSKLAVGDVVGEINNASIRVYDMHSVTMIKVLDASGPPGLPTLLPVATSGTMLTTAISALSFSPDGEGLVAFSENGLLIRWWSVGSFWWEKLSRNFVPVQCTKLIFVPPWEGFSPNSSRSSIMANILETDRQLNFQDNARDSNHGDSPKHLLHNLDLSYRLEWAEGRKVLLTRHGHELGTFQL 1464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00458 1464 ProSitePatterns Trp-Asp (WD) repeats signature. 565 579 IPR019775 -
Pumo6g00458 1464 Pfam WD domain, G-beta repeat 59 108 IPR001680 GO:0005515
Pumo6g00458 1464 Pfam WD domain, G-beta repeat 533 578 IPR001680 GO:0005515
Pumo6g00458 1464 SUPERFAMILY ARM repeat 795 1260 IPR016024 -
Pumo6g00458 1464 SUPERFAMILY WD40 repeat-like 18 688 IPR036322 GO:0005515
Pumo6g00458 1464 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 538 593 - -
Pumo6g00458 1464 ProSiteProfiles Trp-Asp (WD) repeats profile. 565 587 IPR001680 GO:0005515
Pumo6g00458 1464 MobiDBLite consensus disorder prediction 737 772 - -
Pumo6g00458 1464 SUPERFAMILY WD40 repeat-like 1276 1368 IPR036322 GO:0005515
Pumo6g00458 1464 Gene3D - 492 781 IPR015943 GO:0005515
Pumo6g00458 1464 Gene3D - 4 230 IPR015943 GO:0005515
Pumo6g00458 1464 PANTHER RABCONNECTIN-3B, ISOFORM A 3 1464 - -
Pumo6g00458 1464 SMART WD40_4 530 578 IPR001680 GO:0005515
Pumo6g00458 1464 SMART WD40_4 55 108 IPR001680 GO:0005515
Pumo6g00458 1464 SMART WD40_4 1330 1364 IPR001680 GO:0005515
Pumo6g00458 1464 SMART WD40_4 5 46 IPR001680 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00458 K24738 - gmx:100816646 2749.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00458 6 5725787 5742823 Pumo6g00458 6 5725787 5742823 ECH