Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00415 ATGGAAAAGCTTATCAGCATGTTCCCTTTGCTTCTTCTTCTTCTTCTGTGCCCCACTTTTGCCGTTGCTGGCCATGACTATGGCCAAGCTCTGAGCAAGAGCCTTCTGTTCTTTGAAGCTCAGAGATCTGGTTACCTTCCCCATAACCAGAGAGTCACATGGAGAGCACATTCTGGTTTGCAAGATGGCAAAGCAAGCGGGGTGGATCTAGTTGGAGGGTACTATGATGCAGGGGACAATGTGAAGTTCGGGTTACCCATGGCGTTTACCGTTACGATGATGTCGTGGAGCATCATTGAATACGGCAAACAAATGGCTGCTAGTGGCGAACTTGGTCACGCCATGGAAGCCGTTAAGTGGGGTACGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAGGTGGGAGACGGGAACACTGACCATTACTGTTGGCAAAGGCCAGAGGACATGACAACCGACCGTCATGCTTACAAGATCGATCCGAGCAATCCCGGGTCGGATCTCGCGGGAGAAACCGCTGCCGCTATGGCTGCCGCATCCATTGTTTTCCGACGCTCTAACCCTGCCTATGCCGCCGAACTCCTCCGCCATGCCTACCAGCTATTTGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATTACGGTTGCCCAGAAGTATTACAGATCCATCAGTGGTTACAATGATGAATTGCTCTGGGCCGCTGCTTGGTTGTATCAAGCATCTAACAATCAGTATTACTTGGATTACCTTGGAAGAAATGGTGATTCCATGGGTGGAACTGGTTGGAGCATGACTGAATTTGGTTGGGATGTCAAGTATGCTGGGGTTCAGACATTGGTTGCCAAGTTCCTAATGCAAGGCAAAGCTGCCCATCATGCACCAGTTTTTGAGAGATATCAGCAGAAGGCTGAATCTTTCATGTGTTCATGCCTTGGAAAGGGTAACCGCAATGTTCAGAAGACTCCTGGTGGCCTCATCTTTCGCCAGAGATGGAACAACATGCAGTTTGTCACAAGTGCCTCATTTTTAGCCACTGTCTACTCTGACTACCTTGCTTCTTCTGGTAGAAACTTGAGATGCAGTTCAGGCAATGTCCCCCCTGCTGAGCTTCTCTCCCTTGCAAAGTCTCAGGTGGACTACCTTCTTGGTGACAACCCAAGAGCCACTAGCTACATGGTGGGCTATGGAAGCAACTTCCCACAAAGGGTTCATCACAGAGGTTCATCCATTGTTTCCGTCAAGGTTAACCCTTCGTTTGTCAGCTGCCGTGGAGGTTATGCTACTTGGTTTAGCAGCAAAAGGAGCGACCCCAACCTACTCACTGGTGCTGTTGTTGGTGGACCTGATGCATATGATGACTTTGCTGATGAAAGAGATAACTATGAGCAAACAGAGCCAGCAACCTATAACAATGCTCCTCTTATCGGTATTCTAGCAAGACTAGGTGGAGGTCATGGTGGCTACAACCAGCTTCTTCCAGTTGTTGTTCCAGCTCCTAAGCCTGTTGTTACCAAGCCTCAACCAACCCCCAGTCCCAAGAAAACTCCATCTCCAGCTTCATGGTCAGGTCCTAATTTCCATTGA 1608 0.4888 MEKLISMFPLLLLLLLCPTFAVAGHDYGQALSKSLLFFEAQRSGYLPHNQRVTWRAHSGLQDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSIIEYGKQMAASGELGHAMEAVKWGTDYFIKAHPQANVLYGEVGDGNTDHYCWQRPEDMTTDRHAYKIDPSNPGSDLAGETAAAMAAASIVFRRSNPAYAAELLRHAYQLFDFADKYRGKYDSSITVAQKYYRSISGYNDELLWAAAWLYQASNNQYYLDYLGRNGDSMGGTGWSMTEFGWDVKYAGVQTLVAKFLMQGKAAHHAPVFERYQQKAESFMCSCLGKGNRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASSGRNLRCSSGNVPPAELLSLAKSQVDYLLGDNPRATSYMVGYGSNFPQRVHHRGSSIVSVKVNPSFVSCRGGYATWFSSKRSDPNLLTGAVVGGPDAYDDFADERDNYEQTEPATYNNAPLIGILARLGGGHGGYNQLLPVVVPAPKPVVTKPQPTPSPKKTPSPASWSGPNFH 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00415 535 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 462 480 IPR033126 -
Pumo6g00415 535 SUPERFAMILY Six-hairpin glycosidases 23 500 IPR008928 GO:0005975
Pumo6g00415 535 Gene3D - 24 491 IPR012341 GO:0005975
Pumo6g00415 535 FunFam Endoglucanase 23 493 - -
Pumo6g00415 535 PANTHER ENDO-1,4-BETA-GLUCANASE 13 490 - -
Pumo6g00415 535 Pfam Glycosyl hydrolase family 9 27 486 IPR001701 GO:0004553|GO:0005975
Pumo6g00415 535 MobiDBLite consensus disorder prediction 509 535 - -
Pumo6g00415 535 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 388 414 IPR018221 -
Pumo6g00415 535 MobiDBLite consensus disorder prediction 509 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00415 Pumo-Chr6 5257770 5263850 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00415 17 532 Glycoside Hydrolase AT1G64390 82.752 0.0 892
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00415 K01179 - gmx:100801949 1004.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00415 6 5257770 5263850 Pumo6g00415 6 5257770 5263850 ECH