Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00401 ATGGGGTGTTGTTGCACCAAACAGCGAGTTGATCATGAAGATCCAGCACTTCTTGCTTCCCAAACCTTTTTTAATATTTCTGAAATTGAAGCATTGTATGATCTGTTCAAGAAATTAAGCAGCTCCATCGTCGACGACGGGCTTATCAGCAAAGAAGAGTTTCAGCTTGGCTTATTTGGAAGCAGCGAGAAACGGAGCCTCTTTGCCGACAGGGTATTTCATTTATTTGACTCAAAAAATGATGGGGTGATAGAATTTGGAGAGTTCGTTCGAGCTCTGAGCGTCTTCCACCCATCAGCGCCACAAACACAAAAAGCAGACTTTGCATTTCAACTCTATGATATATGTCAAAGAGGATTTATTGAACGTGCCGAGGTAAGAGAGATGATACTGGCACTACTAAACGAGTCGGATTTGGTTCTGTCTCATGACATAATTGAGGTCATAATTGATAAGTCCTTCGAAGAAGCAGACTCAAAAGGAGATGGAAGGATTGATCCAGAGGAGTGGCAAGAATTTGTAGCTCGAAATCCATCCTTACTGAGGAATATGACAATTCCCTATTTGAAGGATCTTACTACACAGTTTCCTAGTTTTAAACCAACATCAGGCATTGAAGACTATACAAGCAGCTCATCCCCTGAGAAAGATTACATCTTAGAAGGACAATTTCAACGGTGTCAGCATTAA 690 0.4116 MGCCCTKQRVDHEDPALLASQTFFNISEIEALYDLFKKLSSSIVDDGLISKEEFQLGLFGSSEKRSLFADRVFHLFDSKNDGVIEFGEFVRALSVFHPSAPQTQKADFAFQLYDICQRGFIERAEVREMILALLNESDLVLSHDIIEVIIDKSFEEADSKGDGRIDPEEWQEFVARNPSLLRNMTIPYLKDLTTQFPSFKPTSGIEDYTSSSSPEKDYILEGQFQRCQH 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00401 229 ProSiteProfiles EF-hand calcium-binding domain profile. 145 180 IPR002048 GO:0005509
Pumo6g00401 229 PANTHER CALCINEURIN B 2 204 IPR045198 GO:0005509|GO:0019722|GO:0019900
Pumo6g00401 229 ProSiteProfiles EF-hand calcium-binding domain profile. 64 99 IPR002048 GO:0005509
Pumo6g00401 229 CDD EFh 105 175 IPR002048 GO:0005509
Pumo6g00401 229 FunFam calcineurin B-like protein 3 14 207 - -
Pumo6g00401 229 PRINTS Recoverin family signature 165 185 - -
Pumo6g00401 229 PRINTS Recoverin family signature 72 93 - -
Pumo6g00401 229 PRINTS Recoverin family signature 119 137 - -
Pumo6g00401 229 ProSiteProfiles EF-hand calcium-binding domain profile. 101 136 IPR002048 GO:0005509
Pumo6g00401 229 Pfam EF hand 150 174 IPR002048 GO:0005509
Pumo6g00401 229 Pfam EF hand 70 91 IPR002048 GO:0005509
Pumo6g00401 229 SMART efh_1 149 177 IPR002048 GO:0005509
Pumo6g00401 229 SMART efh_1 105 133 IPR002048 GO:0005509
Pumo6g00401 229 SMART efh_1 68 96 IPR002048 GO:0005509
Pumo6g00401 229 SUPERFAMILY EF-hand 16 191 IPR011992 -
Pumo6g00401 229 Gene3D - 14 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00401 Pumo-Chr6 5121987 5125481 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00401 14 207 EF-hand Containing Proteins AT4G26570 63.636 4.46e-87 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00401 K06268 - gmx:100808628 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00401 6 5121987 5125481 Pumo6g00401 6 5121987 5125481 ECH