Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00383 ATGCCGGGTCTCGTCTCCGTAAAATCTCCACCGGACGCTCCACCGCTCCGAATCTCCGTCCCCAACACCCCGACCCAATCCCAAAGATCCGAACCCGCAAACTCCAACAACAACAACACCAAAACCCCTTCCCCACTCCCCAAAAAACCACCCTCCCCATCCCCTTCTCGCTCCTCTAAAAAGAAAACTCCCGAAACCCCTCCCAACCCGGTTCTCTCAGATGCCTCCCTCGACAACCCGGATCTCGGCCCATTCCTCCTCAAGCTGGCCCGCGACACCATTGCCTCGGGCGATGGGCCTGCCAAGGCCCTCGACTTCGCCATCCGGGCCTCCAAGTCCTTCGAGCGCTGCGCCGTCGAGGGCGAGCCCAGCCTCGACCTCGCCATGAGCCTCCACGTCCTCGCCGCCATCTACTGCAGCCTCGGACGCTTCGAAGAAGCCGTCCCCGTCCTCGAACGCGCCATCCAAGTCCCCGACGTCGAGCGCGGCGCGGATCACGCCCTCGCCGCCTTCTCCGGCTACATGCAACTCGGCGACACCTTCTCCATGCTCGGCCAGGTCGACAGATCCATCTCCTGCTACGACCAAGGCCTCCAGATCCAGATCCAAGCCCTCGGCGACACCGATCCCCGCGTCGGTGAAACTTGCCGATACTTGGCGGAGGCGAATGTGCAAGCAATGCAGTTTGATAAAGCGGAGGAGCTGTCTAAGAAGACACTGGAGATTCATCGTGCACATAGTGAACCGGCTTCGCTTGAGGAAGCTGCAGATAGGAGGCTCATGGCACTGATTTGTGAGGCGAAGGGAGATTATGAATCGGCGTTGGAGCATCTTGTGCTTGCTAGCATGGCTATGATTGCGAATGGTCAAGATAATGAGGTTGCATCAATTGATGTTAGCATTGGGAACATTTACATGTCGCTTTGTCGGTTTGACGAGGCGATTTTCTCATACCAGAAGGCGCTTACTGTGTTTAAGTCTGCCAAGGGTGAGAACCACCCTTCTGTTGCGTCTGTTTTTGTGAGGCTTGCTGATTTGTACCACAGGACTGGGAAGCTTCGCGAGTCAAAGTCTTACTGCGAGAATGCGCTTAGGATTTACTCAAAGCCGGTGCCGGGGACCACCGCGGAGGAGATTGCTGGTGGCTTGACAGAGGTTTCGGCAGTTTTTGAATCAGTGGATGAGCCGGAGGAGGCGCTGAAGCTGTTGAACAGGGCAATGAAGTTGTTGGAGGATAAGCCGGGGCAGCAGAGCACGATTGCGGGGATTGAGGCGCGAATGGGAGTGATGTATTACATGATTGGGAGGTATGAGGACTCAAGGAACTCATTTGAGAGTGCTGTGGCAAAACTCAGGGCTAGTGGGGAGAGGAAGAGTGCCTTCTTTGGAGTTGTTTTGAACCAGATGGGGTTGGCGTGTGTTCAACTGTTCAAGATTGACGAAGCTGCTGAGTTGTTTGAAGAAGCTAGGGGAATTCTTGAACAGGAGTGTGGCCCCTGTCATCAGGATACTCTTGGGGTGTACAGCAATCTTGCAGCTACATATGATGCTATGGGAAGAGTGGGAGATGCGATTGAAATCTTAGAATATGTCCTTAAGCTGAGGGAGGAAAAGCTTGGAATAGCAAATCCTGATTTTGAAGATGAGAAGCGTCGGCTGGCCGAGCTTCTGAAAGAAGCAGGCAAGACACGAGACAGAAAAGCGAAATCTCTGGAAAACCTTATCGATCCTGGCTCAAAGAGGACAAAGAAGGAGGGGACAAAGAGGTGGCCTGGTTTGGGGTTTAGAATTTAA 1794 0.5418 MPGLVSVKSPPDAPPLRISVPNTPTQSQRSEPANSNNNNTKTPSPLPKKPPSPSPSRSSKKKTPETPPNPVLSDASLDNPDLGPFLLKLARDTIASGDGPAKALDFAIRASKSFERCAVEGEPSLDLAMSLHVLAAIYCSLGRFEEAVPVLERAIQVPDVERGADHALAAFSGYMQLGDTFSMLGQVDRSISCYDQGLQIQIQALGDTDPRVGETCRYLAEANVQAMQFDKAEELSKKTLEIHRAHSEPASLEEAADRRLMALICEAKGDYESALEHLVLASMAMIANGQDNEVASIDVSIGNIYMSLCRFDEAIFSYQKALTVFKSAKGENHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYSKPVPGTTAEEIAGGLTEVSAVFESVDEPEEALKLLNRAMKLLEDKPGQQSTIAGIEARMGVMYYMIGRYEDSRNSFESAVAKLRASGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARGILEQECGPCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELLKEAGKTRDRKAKSLENLIDPGSKRTKKEGTKRWPGLGFRI 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00383 597 Gene3D Tetratricopeptide repeat domain 464 574 IPR011990 GO:0005515
Pumo6g00383 597 ProSiteProfiles TPR repeat profile. 295 328 IPR019734 GO:0005515
Pumo6g00383 597 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 31 578 - -
Pumo6g00383 597 MobiDBLite consensus disorder prediction 562 597 - -
Pumo6g00383 597 Pfam MalT-like TPR region 132 281 IPR041617 -
Pumo6g00383 597 FunFam Protein KINESIN LIGHT CHAIN-RELATED 2 457 574 - -
Pumo6g00383 597 Gene3D Tetratricopeptide repeat domain 76 171 IPR011990 GO:0005515
Pumo6g00383 597 MobiDBLite consensus disorder prediction 19 43 - -
Pumo6g00383 597 SUPERFAMILY TPR-like 131 541 IPR011990 GO:0005515
Pumo6g00383 597 Coils Coil 546 566 - -
Pumo6g00383 597 SMART tpr_5 171 204 IPR019734 GO:0005515
Pumo6g00383 597 SMART tpr_5 505 538 IPR019734 GO:0005515
Pumo6g00383 597 SMART tpr_5 295 328 IPR019734 GO:0005515
Pumo6g00383 597 SMART tpr_5 463 496 IPR019734 GO:0005515
Pumo6g00383 597 SMART tpr_5 421 454 IPR019734 GO:0005515
Pumo6g00383 597 SMART tpr_5 255 288 IPR019734 GO:0005515
Pumo6g00383 597 SMART tpr_5 128 161 IPR019734 GO:0005515
Pumo6g00383 597 SMART tpr_5 337 370 IPR019734 GO:0005515
Pumo6g00383 597 SMART tpr_5 213 246 IPR019734 GO:0005515
Pumo6g00383 597 SMART tpr_5 380 413 IPR019734 GO:0005515
Pumo6g00383 597 MobiDBLite consensus disorder prediction 56 73 - -
Pumo6g00383 597 MobiDBLite consensus disorder prediction 1 77 - -
Pumo6g00383 597 Gene3D Tetratricopeptide repeat domain 282 463 IPR011990 GO:0005515
Pumo6g00383 597 Gene3D Tetratricopeptide repeat domain 172 281 IPR011990 GO:0005515
Pumo6g00383 597 MobiDBLite consensus disorder prediction 562 591 - -
Pumo6g00383 597 Pfam Tetratricopeptide repeat 465 537 - -
Pumo6g00383 597 Pfam Tetratricopeptide repeat 294 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00383 Pumo-Chr6 4975129 4979401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00383 134 340 Glycosyltransferase AT3G04240 24.268 1.68e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00383 - - gmx:100815100 1047.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00383 6 4975129 4979401 Pumo6g00383 6 4975129 4979401 ECH