Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00121 ATGAAATTAGGCTCTGAGGATGATTTAGGGTTTAGGGTACTGATAAATTGTCGGAACGACAAAAAGCTTCTGGGTCGTGTAAGGGCTTTTAATAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAGGTGCCAAAATCCGGGAAAGGAAAGAAAAAGGTCCAGCCAGTCAACATGGATAGGTTCATCAGCAAGAAGTTCCTCTGTGGAGATTCTGTCATCATTGTTCTTAGGAAACCCCAAATGAGATTCTGCCATCAACTTGTAGAAGTAAATGGCTCTGTAGTATTTGCCTTTTTCGTTATATCTTGA 324 0.4167 MKLGSEDDLGFRVLINCRNDKKLLGRVRAFNRHCNMVLENVREMWTEVPKSGKGKKKVQPVNMDRFISKKFLCGDSVIIVLRKPQMRFCHQLVEVNGSVVFAFFVIS 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00121 107 Pfam LSM domain 10 80 IPR001163 -
Pumo6g00121 107 SUPERFAMILY Sm-like ribonucleoproteins 9 83 IPR010920 -
Pumo6g00121 107 ProSiteProfiles Sm domain profile. 1 86 IPR047575 GO:0003723
Pumo6g00121 107 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2 12 84 IPR027248 GO:0008380|GO:0030532
Pumo6g00121 107 CDD Sm_D2 12 84 IPR027248 GO:0008380|GO:0030532
Pumo6g00121 107 SMART Sm3 3 82 IPR001163 -
Pumo6g00121 107 Gene3D - 8 89 - -
Pumo6g00121 107 FunFam Small nuclear ribonucleoprotein Sm D2 6 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00121 Pumo-Chr6 1383343 1384483 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00121 K11096 - gmx:100793233 134.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00121 6 1383343 1384483 Pumo6g00121 6 1383343 1384483 ECH