Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00101 ATGGGGAGCCCCGGATTGAACAATCGCAATAATGGGCAGCAGCAACGGTTAGGCATAACAGAACCCATCTCATTGGGTGGACCTACCGAATATGATGTGATCAAGACACGTGAACTTGAGAAGTACTTGCAAGATGCTGGCTTGTATGAGAATCAGCAGGAGGCAGTTAGTAGAGAGGAAGTGCTTGGCAGGCTAGACCAGATTGTGAAGATTTGGGTCAAAACCATTAGCCGCGCAAAGGGACTAAATGAGCAACTGGTGCAAGAAGCAAATGCCAAGATTTTTACTTTTGGCTCCTATCGACTTGGGGTGCATGGCCCTGGAGCAGATATAGACACTCTTTGTGTGGGACCGAGACATGCATCCAGAGATGAAGATTTCTTTGGTGAGCTACATAAGATGCTATCTGAGATGCCAGGAGTAACAGAGTTGCACCCTGTGCCTGATGCTCATGTACCAGTGATGAGGTTCAAGTTCAATGGTGTTTCTATAGATCTCCTTTATGCAAAATTATCTTTGTGGGTTATTCCTGAAGACTTGGATATATCACAGGAGTCAATATTACAAAATGCAGATGAGCAAACTGTCCGTAGTCTTAATGGTTGTAGAGTGACTGATCAAGTCCTGCGTTTGGTTCCAAATATTCAGAATTTTCGTACAACATTGAGGTGCATGAAGTTTTGGGCAAAGCGTCGTGGTGTTTATTCAAATGTTACAGGTTTTCTTGGTGGTATAAACTGGGCGTTGCTTGTTGGTCGAATATGCCAGCTATTTCCTAATGCACTGCCTAATATGTTAGTGTCTCGATTCTTCAGGGTATATACTCAGTGGCGTTGGCCAAATCCAGTAATGCTTTGTGCTATTGAAGAGGGATCACTTGGACTTCAAGTTTGGGATCCTAGAAGATATCCCAAGGATAGATTCCATCTAATGCCGATAATTACTCCTGCTTATCCTTGCATGAATTCTAGCTACAATGTGTCGTCAAGTACATTGCGTATTATGACTGAGGAGTTTCAGAGGGGAAATGAAGTGTGTGAGGCTATGGAGGCTAACAAGGCTGATTGGGACACACTTTTTGAGCCTTATCCCTTTTTTGAATCTTATAAGAATTATTTGCAGATAGACATATCAGCGGAGAATGCTGATGATCTCAGAAAATGGAAAGGCTGGGTTGAGTCTCGCCTGCGCCAGTTGACATTGAAAATTGAGAGGCACACTTATGGCATGCTTCAGTGTCATCCACATCCTGGTGACTTTTCAGACAAATCCAGACCTTTCCACCACTCCTACTTCATGGGACTGCAACGTAAGCAAGGAGTTCCTGTCACTGATGGTGGACAGTTTGATATAAGACTAACTGTTGAAGAGTTTAAGCATTCTGTCAACATGTACACTCTATGGAAACCTGGAATGGATATCCATGTCTCCCATGTGAAACGTCGTAACATACCTACCTTTGTATTTCCTGGTGGTGTTCGACCTTCTCGCCCATCTAAAGTAACTTGGGAGATTAAGCAAAGTTCAGAGTTAAGGGTTTCTGGCCATGGTCAAGAAGAAAAGTCTCTAGAAGGTGAAGTGGTTGTATTTGGAGCAAATGATGATAGGAAGAGAAAACAAGCAGAGGATAGTGTGGATAGCTTGAGAAATTCCAAGTCCCTCGCATCTTTGCCTCCCTCCAGCAGGGAAGTTCATGAAGATGGAAATCCTATTAGCACTGCTAGTTCTTGCTCTGTGAAATGTAATGACTTGGAAATCAATAGTACGAGTGAACAACAAAGTGAGAAACCTGATTTGGAATCTTCAGGGGAGTGTCCTGGGGATAGAGAGACCAATGGAGCAGTGACAAGCAACTTACAAGTTAATGCAACACTTACTGCCACGGATACATCTAGTTCTAAAGAAGCTGAAAAGCTAGCCATTGAGAAGATTATGTGTGGTCCATATGATGCACACCAAGTCTTTTCAGAAGAACCTGATGAGCTTGAAAATGATCTTGAGTACAGAAATCAAGTCAAAGATTTTGGTGGGAAGATGAAAAACAGCAACTTGGACTCTTCAAACTCAGAGACTGCAGTAGTAGCTGCAGAACGAATTATTCCCAAGAAGGAAACCACTTCTGCAACTCGTTTATACTCAAACGCGGGCTTAGAAGAGCTCGAGGCGGCGGAGCTGACAGCGCCATTATTGAGTGGGATCCCTGCAGCTGTGCCACAGACACAGAGGAAGCCCCTTATCAGGTTTAATTTCACCTCCTTAGGGAAACCTGCTGACAAAAGTTCCTAG 2286 0.4361 MGSPGLNNRNNGQQQRLGITEPISLGGPTEYDVIKTRELEKYLQDAGLYENQQEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHASRDEDFFGELHKMLSEMPGVTELHPVPDAHVPVMRFKFNGVSIDLLYAKLSLWVIPEDLDISQESILQNADEQTVRSLNGCRVTDQVLRLVPNIQNFRTTLRCMKFWAKRRGVYSNVTGFLGGINWALLVGRICQLFPNALPNMLVSRFFRVYTQWRWPNPVMLCAIEEGSLGLQVWDPRRYPKDRFHLMPIITPAYPCMNSSYNVSSSTLRIMTEEFQRGNEVCEAMEANKADWDTLFEPYPFFESYKNYLQIDISAENADDLRKWKGWVESRLRQLTLKIERHTYGMLQCHPHPGDFSDKSRPFHHSYFMGLQRKQGVPVTDGGQFDIRLTVEEFKHSVNMYTLWKPGMDIHVSHVKRRNIPTFVFPGGVRPSRPSKVTWEIKQSSELRVSGHGQEEKSLEGEVVVFGANDDRKRKQAEDSVDSLRNSKSLASLPPSSREVHEDGNPISTASSCSVKCNDLEINSTSEQQSEKPDLESSGECPGDRETNGAVTSNLQVNATLTATDTSSSKEAEKLAIEKIMCGPYDAHQVFSEEPDELENDLEYRNQVKDFGGKMKNSNLDSSNSETAVVAAERIIPKKETTSATRLYSNAGLEELEAAELTAPLLSGIPAAVPQTQRKPLIRFNFTSLGKPADKSS 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00101 761 MobiDBLite consensus disorder prediction 534 618 - -
Pumo6g00101 761 MobiDBLite consensus disorder prediction 566 596 - -
Pumo6g00101 761 MobiDBLite consensus disorder prediction 1 20 - -
Pumo6g00101 761 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 363 489 IPR011068 GO:0003723|GO:0016779|GO:0031123
Pumo6g00101 761 FunFam Putative poly(A) polymerase gamma 179 360 - -
Pumo6g00101 761 FunFam Nuclear poly(A) polymerase 4 364 479 - -
Pumo6g00101 761 Gene3D Poly(A) polymerase predicted RNA binding domain 364 479 - -
Pumo6g00101 761 MobiDBLite consensus disorder prediction 1 24 - -
Pumo6g00101 761 SUPERFAMILY Nucleotidyltransferase 18 211 IPR043519 -
Pumo6g00101 761 Pfam Poly(A) polymerase predicted RNA binding domain 365 423 IPR007010 GO:0003723|GO:0043631
Pumo6g00101 761 Pfam Poly(A) polymerase predicted RNA binding domain 424 496 IPR007010 GO:0003723|GO:0043631
Pumo6g00101 761 Gene3D - 18 360 - -
Pumo6g00101 761 PANTHER POLY A POLYMERASE 9 564 - -
Pumo6g00101 761 Pfam Nucleotidyltransferase domain 83 166 IPR002934 GO:0016779
Pumo6g00101 761 CDD NT_PAP_TUTase 58 212 - -
Pumo6g00101 761 Gene3D Beta Polymerase, domain 2 50 206 IPR043519 -
Pumo6g00101 761 Pfam Poly(A) polymerase central domain 18 362 IPR007012 GO:0043631|GO:1990817
Pumo6g00101 761 FunFam Poly(A) polymerase alpha, putative 50 206 - -
Pumo6g00101 761 SUPERFAMILY PAP/OAS1 substrate-binding domain 213 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00101 Pumo-Chr6 1054082 1058676 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00101 K14376 - gmx:100816915 1197.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00101 6 1054082 1058676 Pumo6g00101 6 1054082 1058676 ECH