Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00096 ATGGCCGTCCCGGTGGAGCTCTCCGACCGCGACTCCCTCGTGAAGTCCGCCAGCACCTCCCTCAACAGCAAGGTCGTCAGCCAGTACTCCACGCTCCTCGCTCCCCTCGCCGTCGACGCCGTGCTCTCCGTCGTGGACGCCCCCAAGCCCGACATGGTTGACCTCCGCGACGTCAAGATCGTGAAGAAGCTCGGCGGCACCGTGGACGACACCGAGCTCGTGAAAGGCCTCGTCTTCGACAAGAAGGTCAGCCACGCCGCCGGGGGACCCACCCGCATGGAGAACGCCAAGATCGCCGTCATCCAGTTCCAGATTTCGCCCCCGAAAACCGACATCGAACAGAGCATTGTGGTGAGTGATTACTCTCAGATGGATAGGATTCTAAAAGAAGAGCGTAGTTATATCCTTGGCATGATTAAGAAGATCAAGGCCACTGGCTGTAATGTGTTGTTGATTCAGAAGAGTATTTTGAGAGATGCTGTTACTGATTTGTCCTTGCATTACCTTGCAAAAGCTAAGATTTTGGTGATTAAGGATGTGGAGAGGGATGAGATTGAGTTCATTACCAAGACACTGAATTGTTTGCCCATTGCTAACATTGAGCATTTTCGCGCTGAGAAGTTGGGTTATGCTGATCTTGTGGAGGAGGTTTCTCTTGGGGATGGGAAGATTGTGAAGATTACTGGGATCAAGGAGATGGGGAAGACCACCACTGTGCTTGTTCGTGGGTCTAATCAGCTTGTGCTTGATGAGGCCGAGCGTAGTCTGCACGATGCTTTGTGTGTTGTTAGGTGTTTGGTTGCCAAGAGGTTTCTCATTGCTGGTGGTGGCGCGCCAGAGATTGAGCTCTCCAGGCAGCTTGGTGCCTGGGCCAAGGTGTTGCATGGGATGGAGGGTTACTGTGTGAAGGCATTTGCTGAGGCACTTGAAGTTATTCCCTATACTCTGGCTGAGAATGCTGGTTTGAATCCGATTGCCATTGTTACTGAGCTGAGGAATCGTCATGCACAGGGTGAGATAAATGCTGGAATAAATGTGAGGAAGGGTACAGATTACCAACATCTTGGAGGAGAATGTGGTGCAGCCTCTGCTTGTGAGCACGAGTGCGATCACTTTGGCGACAGAGTGTGTGCGGATGATTTTGAAGATTGA 1152 0.5182 MAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDAVLSVVDAPKPDMVDLRDVKIVKKLGGTVDDTELVKGLVFDKKVSHAAGGPTRMENAKIAVIQFQISPPKTDIEQSIVVSDYSQMDRILKEERSYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKAKILVIKDVERDEIEFITKTLNCLPIANIEHFRAEKLGYADLVEEVSLGDGKIVKITGIKEMGKTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVAKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCVKAFAEALEVIPYTLAENAGLNPIAIVTELRNRHAQGEINAGINVRKGTDYQHLGGECGAASACEHECDHFGDRVCADDFED 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00096 383 Gene3D - 6 270 IPR027410 -
Pumo6g00096 383 SUPERFAMILY GroEL equatorial domain-like 244 350 IPR027413 -
Pumo6g00096 383 PRINTS Tailless complex polypeptide 1 (chaperone) signature 238 260 IPR017998 GO:0140662
Pumo6g00096 383 PRINTS Tailless complex polypeptide 1 (chaperone) signature 272 284 IPR017998 GO:0140662
Pumo6g00096 383 CDD TCP1_delta 1 349 IPR012717 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Pumo6g00096 383 FunFam T-complex protein 1 subunit delta 75 233 - -
Pumo6g00096 383 Gene3D GroEL 75 234 IPR027409 -
Pumo6g00096 383 Gene3D - 271 350 IPR027413 -
Pumo6g00096 383 PANTHER CHAPERONIN 10 350 IPR017998 GO:0140662
Pumo6g00096 383 Pfam TCP-1/cpn60 chaperonin family 2 350 IPR002423 GO:0005524
Pumo6g00096 383 SUPERFAMILY GroEL apical domain-like 70 243 IPR027409 -
Pumo6g00096 383 SUPERFAMILY GroEL-intermediate domain like 7 268 IPR027410 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00096 Pumo-Chr6 1024692 1026810 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00096 58 284 EF-hand Containing Proteins AT3G14270 24.691 3.28e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00096 K09496 - gmx:100786888 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00096 6 1024692 1026810 Pumo6g00096 6 1024692 1026810 ECH