Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00095 ATGCCTATGGCATATTCCGGCATATTTCAGGGCTTCATCAGATTCAAAGCCATGTCTTATCTTCGTTGCACTCCTCTCAGACCTTCTCTTCCCTCCATTTCCACCACTCCTTTTCACCGCACCACCGCCATTCGCCTTCGCTCCTGCTCCCCCGCGCTTCAAGTCGTCAAGGACACGCGCCAGAGGACCGTCAAGTTGCCGTTTTGGAACCAACGCAGCTCCAGCTACGGTCGTTTTGCCTACCAGGACGTCTCCAGTGACGATTCCGATGCCGAATTCGCGTCTTCTCCCTCTCACAACCAACAAATGGGTGATTCAACTCTCGAGAACATTGACGAGTGGAGATGGAAGCTCACCATGCTTATGCGCAACAAAGACGAACAAGAACTGGTGTCCAGGGAGAAGAAGGACCGTCGCGATTTCGAGCAACTTTCCACTTTAGCTACCAGGATGGGTTTGTATAGCCGGCAATATGCAAGAGTTGTTGTGTTTAGCAAGGCGCCTTTGCCAAATTACCGCCCTGATTTGGATGATAAGCGTCCGCAAAGAGAGGTAGTCTTACCACTTGGTGTTCATAAAGAAGTAGATGCTCATCTCCTTGCCCATCTTTCTCGAAAGGCTACAAACAAGTGGGGCTCTTTGGCTGATTCCTTGCATAAATCAAGTGATGCTAGAAGCATTCCAGCCAATGAAGGAATGTATGAACAGCCAGAGCCCAGGACCCATAATAGTGTTGTCAAGGAGAAAATCCTTCAACGAAAAAGTTTGCAACTGCGTCATCAGCAACAGGATTGGCAGGAGTCTCCTGAAGGGCAAAAGATGCTTGAATTTCGTAGAAGTCTTCCTGCTTTCAAAGAGAAGAATGCTTTTCTCAGAGTTATTTCACAGAATCAGGTCGTTGTTGTCTCAGGTGAAACTGGTTGTGGTAAGACCACACAACTTCCTCAATACATATTAGAATCTGAGATTGAAGCTGCATGTGGAGCTGCATGTAACATAATTTGTACTCAGCCTAGAAGAATATCTGCTATGTCTGTTTCTGAAAGAGTTGCAGCAGAACGTGGGGAGAAATTGGGAGAATCTGTTGGATACAAAGTTCGCCTGGAGGGTATGAAAGGGAGAGATACCCGTCTTCTTTTTTGCACCACGGGTGTATTATTGCGGAGACTGCTTGTGGATAGGAATTTAAAAGGTGTAACTCATGTTATTGTTGATGAGATTCACGAACGTGGAATGAATGAAGATTTTCTTCTCATTGTCCTGAAGGAACTTCTCCCTCGTCGTCCTGATTTGAGGTTGATTTTGATGAGTGCAACCTTAAATGCTGAGCTTTTTTCTTCATACTTTAATGGTGCTCCAACTATGCATATTCCTGGTTTTACATTTCCAGTTCGAACACATTTTCTTGAGGATATTCTGGAAAGGACTGGATATCGGTTGACACCTTATAATCAAATTGATGACTATGGTCAAGAAAAAACATGGAAAATGCAGAAGCAAGCTCAAGCTTTCAGAAAAAGAAAGAGCCAGATTGCTTCTGCTGTTGAGGATGCTTTAGAAGTTGCAGACTTTAAGGGGTATAGCCTACGCACTCAAGATTCATTGTCCTGCTGGTGCCCTGACTCAATTGGTTTTAACCTTATTGAACATGTGCTTTGCCACATTGTTAAGAATGAAAGGCCAGGTGCTGTTTTGGTTTTTATGACTGGTTGGGATGATATAAACTCTTTGAAGGATCAACTTCAAGCTCATCCTTTGTTGGGTGATCAGAGCCGAGTATTGGTTCTTGCATGCCATGGCTCCATGGCCAGCTCTGAGCAGAGGTTGATATTTGAAAATCCTGAAGGAGGGGTGAGGAAAATTGTTCTAGCAACTAACATGGCTGAGACTAGTATTACCATCAATGATGTTGTCTTTGTGGTTGACTCTGGAAAAGCAAAAGAAACATCATATGATGCATTAAATAACACTCCTTGTTTGCTTCCATCTTGGATCTCAAAAGCTGCTGCCCGGCAGAGAAGAGGAAGGGCTGGTCGTGTTCAGCCTGGTGAATGCTACCATCTTTATCCCAGATGTGTTTATGATGCTTTTGCTGATTACCAATTGCCAGAGCTTTTGAGAACACCTTTGCAGTCCTTATGTCTGCAAATCAAAACTCTACAACTTGGAAGCATCTCCGAGTTTTTATCTAGAGCTCTACAGCCACCAGAGCCTCTATCGGTTCAAAATGCTATTGAATATTTGAAGATTATTGGGGCCTTAGATGAGAATGAAAAGTTAACAGTTTTAGGGCACAAATTGGCAATGCTTCCTGTAGAGCCCAAACTTGGCAAGATGCTCATTTTGGGAGCTATCTTCAAGTGTTTGGATCCTATAATGACTGTTGTTGCCAGTCTTAGTGTAAGAGATCCATTTGTGATGCCGTCTGACAAGAAGGATCTTGCAGAGTCTGCCAAAGCCCAATTTGCTGCTCGTGACTATAGTGATCATCTTGCACTCATCCGGGCTTATGAGGGTTGGAGAGATGCCGAAGCACAGCAAGCTGGTTATGAGTACTGTTGGCGAAATTTTCTTTCTTCTCAAACACTTAGGGCCATTGACTCTCTTCGAAAGCAATTCTTTTACTTGCTCAAAGATATTGGTCTGGTCAATAACAATTCTGAAACCTACAATACATGGAGTCATGAAGAGCATCTACTACTCCGAGCAGTCATCTGTGCGGGTTTGTTTCCCGGAATATCCTCTGTTGTGAACAAAGATAAGTCAATAGCACTGAAAACAATGGAGGATGGTCAGGTTCTTTTGTATTCCAGCTCTGTAAATGGTGGTGTACCCCGAATTCCATACCCATGGTTAGTGTTTAATGAAAAGGTGAAAGTGAATTCAGTATTCCTTAGGGATTCAACTGGTATATCTGATTCAGTGCTTCTCTTATTTGGTGGGAATGTATCCAGAGGTGGACTAGTAAGTTCTTACCTTATTTCCTCTTCACTTTTCCCCTGGATCTGTTCTTGA 3015 0.4362 MPMAYSGIFQGFIRFKAMSYLRCTPLRPSLPSISTTPFHRTTAIRLRSCSPALQVVKDTRQRTVKLPFWNQRSSSYGRFAYQDVSSDDSDAEFASSPSHNQQMGDSTLENIDEWRWKLTMLMRNKDEQELVSREKKDRRDFEQLSTLATRMGLYSRQYARVVVFSKAPLPNYRPDLDDKRPQREVVLPLGVHKEVDAHLLAHLSRKATNKWGSLADSLHKSSDARSIPANEGMYEQPEPRTHNSVVKEKILQRKSLQLRHQQQDWQESPEGQKMLEFRRSLPAFKEKNAFLRVISQNQVVVVSGETGCGKTTQLPQYILESEIEAACGAACNIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPDLRLILMSATLNAELFSSYFNGAPTMHIPGFTFPVRTHFLEDILERTGYRLTPYNQIDDYGQEKTWKMQKQAQAFRKRKSQIASAVEDALEVADFKGYSLRTQDSLSCWCPDSIGFNLIEHVLCHIVKNERPGAVLVFMTGWDDINSLKDQLQAHPLLGDQSRVLVLACHGSMASSEQRLIFENPEGGVRKIVLATNMAETSITINDVVFVVDSGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKTLQLGSISEFLSRALQPPEPLSVQNAIEYLKIIGALDENEKLTVLGHKLAMLPVEPKLGKMLILGAIFKCLDPIMTVVASLSVRDPFVMPSDKKDLAESAKAQFAARDYSDHLALIRAYEGWRDAEAQQAGYEYCWRNFLSSQTLRAIDSLRKQFFYLLKDIGLVNNNSETYNTWSHEEHLLLRAVICAGLFPGISSVVNKDKSIALKTMEDGQVLLYSSSVNGGVPRIPYPWLVFNEKVKVNSVFLRDSTGISDSVLLLFGGNVSRGGLVSSYLISSSLFPWICS 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00095 1004 MobiDBLite consensus disorder prediction 222 243 - -
Pumo6g00095 1004 FunFam DExH-box ATP-dependent RNA helicase DExH3 543 699 - -
Pumo6g00095 1004 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 547 721 IPR001650 -
Pumo6g00095 1004 SMART ultradead3 270 472 IPR014001 -
Pumo6g00095 1004 Gene3D - 544 699 IPR027417 -
Pumo6g00095 1004 CDD SF2_C_RHA 462 689 - -
Pumo6g00095 1004 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 901 983 IPR011709 -
Pumo6g00095 1004 SMART helicmild6 575 681 IPR001650 -
Pumo6g00095 1004 FunFam Putative ATP-dependent RNA helicase DHX36 723 828 - -
Pumo6g00095 1004 Gene3D - 723 825 - -
Pumo6g00095 1004 CDD DEXHc_RHA-like 297 457 - -
Pumo6g00095 1004 FunFam DExH-box ATP-dependent RNA helicase DExH3 234 459 - -
Pumo6g00095 1004 Pfam Helicase conserved C-terminal domain 549 680 IPR001650 -
Pumo6g00095 1004 Gene3D - 233 459 IPR027417 -
Pumo6g00095 1004 Pfam Helicase associated domain (HA2) 744 830 IPR007502 GO:0004386
Pumo6g00095 1004 Pfam DEAD/DEAH box helicase 291 442 IPR011545 GO:0003676|GO:0005524
Pumo6g00095 1004 PANTHER ATP-DEPENDENT RNA HELICASE 230 982 - -
Pumo6g00095 1004 SMART ha2_5 743 834 IPR007502 GO:0004386
Pumo6g00095 1004 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 287 881 IPR027417 -
Pumo6g00095 1004 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 291 458 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00095 Pumo-Chr6 1011553 1022984 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00095 K14442 - gmx:100791006 1809.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00095 6 1011553 1022984 Pumo6g00095 6 1011553 1022984 ECH