Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00052 ATGAAGTGGTTGTTTGTCTCTCTGATTGTTCTGTCTCTATCTCTCTCCGTCGCCGGCCGGCACTTCGTCCTCGTCCTCTCTCAGGAAGACTACAAGGACGACCCCCCCGCCGAGCCCGACTCCGCCGCCGAGTGGGACGAGTTCGGCGACGGAGACGCCCACAAATCCGAGGATGACCTCGACCCCGGCTCATGGCGCCCCATCTTCGAGCCCCCCGCCGCCGACCCCCAACCCCTCCCGGAATCCGATGCTGCCTACTACTCCGCCGTCCACAAGCTCATGTCCGGTGACCCCGCCCTCATCGAGGACGCCGCCGCCGAGATCGCCGCCTTGGCCGAAACCGGCCACCCCGCCGCTCAATCGGTGCTAGGGTTTTTGTGGGGAATGGGGCTTTTGAGAGAGCGAAGCAAGGGGAAGGCGTTTTTGTACCACCACTTCGCCGCCGAGGGTGGCAACATGCAATCTAAAATGGCTTTGGCTTACACCTACACGCGCCAAGATATGTTTGACAAAGCTGTTAAGCTTTATGCTGAATTAGCTGAAGTGGCTGTGAATAGTTTTCTGATTTCGAAAGACTCTCCTGTGATTGAACCCGTTAGGCTTCACAATGGGGCTGAGGAGAACAAGGAGGCTCTGAGAAAATCCAAGGGGGAAGAGGATGAGGACTTTCAGATACTCGAGTATCAAGCACAGAAGGGGAATGCTGCTGCCATGTACAAAGTTGGCCTCTTTTACTACTTTGGCCTTAGGGGATTGAGGCGCGATCATTCCAAGGCCCTCTCATGGTTTTTGAAGGCTGTCGAGAAGGGTGAGCCACGATCTATGGAGCTTCTTGGAGAGATCTATGCTAGGGGAGCAGGTGTTGAGAGAAACTACACCAAAGCCTTCGAGTGGCTCACCCTTGCTTCCAGGCACCACCTCTATTCTGCTTATAATGGCATGGGATATTTGTATGTCAAAGGCTATGGAGTTGACAAGAAGAATTACACTAAAGCCAAAGAGTATTTTGAAAAGGCTGCAGAGAATGACGAGGTTGGTGGCCACTATAACCTCGGTGTCATGTATCTCAAGGGGATTGGAGTCAAGAGGGATGTTAAGCTGGCCTGTAGGTTCTTTGTGGTGGCTGCTAACCATGGTCAGCCAAAGGCATTCTACCAGCTGGCTAAGATTTTCCATATTGGTGTTGGGTTCAAGAAGAATATTCCCTTGGCAACTGCACTTTACAAACTAGTTGCAGAGCGGGGTCCATGGAGTTCTTTGTCTAGATGGGCTCTAGAATCATACTTAAAAGGTGATGTTGGCAAGGCATTTATGTTGTATTCAAGAATGGCTGAGATGGGCTATGAGGTGGCACAAAGTAATGCTGCTTGGATTCTTGACAAATATGGGGAACGTAGCATGTGCATGGGTGAATCTGGATTTTGCACTGATGCAGAAAGGCATCAGCGGGCACATTCTCTGTGGTGGCAAGCTTCTGAGCAGGGTAATGAACATGCTGCTTTACTCATTGGAGATGCATATTACTATGGTCGGGGTACTGTCAGGGATTATGATCGAGCTGCTGAGGCTTACATGCATGCTAAATCACAATCTAATGCACAAGCCATGTTCAATCTTGGATACATGCATGAGCATGGCCAAGGACTTCCATTTGACCTTCATCTAGCCAAGCGTTACTACGATGAAGCTCTAGAGCATGATCCTGCAGCGAAGTTGCCAGTCACACTGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTTATGGTACACGTGATTGATTCATTGCCAGATCTGTATCCTAAATTAGAAGCTTGGGTGGAGAATGTGCTTTTGGAGGAGGGAAATGCTACAATTCTGACCCTCTTTGTATGCCTCCTAACAGTGCTGTATCTCCGTGAGAGGCAACGAAGGCAAGCTGCTGTTGCAGCTGGAGAGGTGGCTCAGCCAAATCGCCCCAACGAGCTTGGTGTACCCGCACCCATCTAA 1998 0.5065 MKWLFVSLIVLSLSLSVAGRHFVLVLSQEDYKDDPPAEPDSAAEWDEFGDGDAHKSEDDLDPGSWRPIFEPPAADPQPLPESDAAYYSAVHKLMSGDPALIEDAAAEIAALAETGHPAAQSVLGFLWGMGLLRERSKGKAFLYHHFAAEGGNMQSKMALAYTYTRQDMFDKAVKLYAELAEVAVNSFLISKDSPVIEPVRLHNGAEENKEALRKSKGEEDEDFQILEYQAQKGNAAAMYKVGLFYYFGLRGLRRDHSKALSWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKAFEWLTLASRHHLYSAYNGMGYLYVKGYGVDKKNYTKAKEYFEKAAENDEVGGHYNLGVMYLKGIGVKRDVKLACRFFVVAANHGQPKAFYQLAKIFHIGVGFKKNIPLATALYKLVAERGPWSSLSRWALESYLKGDVGKAFMLYSRMAEMGYEVAQSNAAWILDKYGERSMCMGESGFCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTVRDYDRAAEAYMHAKSQSNAQAMFNLGYMHEHGQGLPFDLHLAKRYYDEALEHDPAAKLPVTLALSSLWVRKNYADSFMVHVIDSLPDLYPKLEAWVENVLLEEGNATILTLFVCLLTVLYLRERQRRQAAVAAGEVAQPNRPNELGVPAPI 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00052 665 Pfam Sel1 repeat 499 521 IPR006597 -
Pumo6g00052 665 Pfam Sel1 repeat 235 270 IPR006597 -
Pumo6g00052 665 Pfam Sel1 repeat 309 343 IPR006597 -
Pumo6g00052 665 Pfam Sel1 repeat 430 448 IPR006597 -
Pumo6g00052 665 Pfam Sel1 repeat 273 305 IPR006597 -
Pumo6g00052 665 Pfam Sel1 repeat 118 152 IPR006597 -
Pumo6g00052 665 Pfam Sel1 repeat 348 379 IPR006597 -
Pumo6g00052 665 Pfam Sel1 repeat 533 567 IPR006597 -
Pumo6g00052 665 Gene3D Tetratricopeptide repeat domain 197 310 IPR011990 GO:0005515
Pumo6g00052 665 FunFam ERAD-associated E3 ubiquitin-protein ligase component HRD3A 200 311 - -
Pumo6g00052 665 SMART sel1 235 271 IPR006597 -
Pumo6g00052 665 SMART sel1 497 532 IPR006597 -
Pumo6g00052 665 SMART sel1 117 152 IPR006597 -
Pumo6g00052 665 SMART sel1 533 568 IPR006597 -
Pumo6g00052 665 SMART sel1 272 307 IPR006597 -
Pumo6g00052 665 SMART sel1 308 344 IPR006597 -
Pumo6g00052 665 SMART sel1 345 380 IPR006597 -
Pumo6g00052 665 SMART sel1 381 416 IPR006597 -
Pumo6g00052 665 MobiDBLite consensus disorder prediction 47 64 - -
Pumo6g00052 665 Gene3D Tetratricopeptide repeat domain 424 587 IPR011990 GO:0005515
Pumo6g00052 665 SUPERFAMILY HCP-like 102 182 - -
Pumo6g00052 665 SUPERFAMILY HCP-like 326 568 - -
Pumo6g00052 665 Gene3D Tetratricopeptide repeat domain 82 187 IPR011990 GO:0005515
Pumo6g00052 665 SUPERFAMILY HCP-like 216 326 - -
Pumo6g00052 665 MobiDBLite consensus disorder prediction 31 81 - -
Pumo6g00052 665 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 4 648 IPR044623 GO:0030433
Pumo6g00052 665 Gene3D Tetratricopeptide repeat domain 311 423 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00052 K14026 - gmx:100787823 1251.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00052 6 569186 573163 Pumo6g00052 6 569186 573163 ECH