Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03929 ATGGAAAGCAACCAATCCGCAAAAGAGATCACGGTGGAAGCAGAGTTCGAGGACTTGCTGCCTGTGATGGCAGAGAATATGGATGTGGAGACCTTTGTATCTGAGTTATGTGGGGGTTTCAAGCTTCTGGTTGACCCAAAAACGGGTTTGATCTCTTGTGAGAGTCTCATGAGGAATTTAGCTCTGTTGGGTATGGATGGGATGAGCAAAGAGGAAGCAGAGACCATGGTTAGACAGGGAGATCTTAATGGGGATGGGAAACTCAATGCAACTGAGTTTTACATCCTTATGGTGAGGCTTAGCCCTGGGATCATGGAAGAAGCTAAGGCCTGGCTTCATAAGGCACTTGAACAAGAGCTTACCAAATCCTTAACTTAA 378 0.4603 MESNQSAKEITVEAEFEDLLPVMAENMDVETFVSELCGGFKLLVDPKTGLISCESLMRNLALLGMDGMSKEEAETMVRQGDLNGDGKLNATEFYILMVRLSPGIMEEAKAWLHKALEQELTKSLT 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03929 125 ProSitePatterns EF-hand calcium-binding domain. 81 93 IPR018247 -
Pumo5g03929 125 Gene3D - 13 124 - -
Pumo5g03929 125 ProSiteProfiles EF-hand calcium-binding domain profile. 68 103 IPR002048 GO:0005509
Pumo5g03929 125 SUPERFAMILY EF-hand 30 108 IPR011992 -
Pumo5g03929 125 PANTHER CALCIUM-BINDING PROTEIN KIC 14 122 IPR044205 GO:0005509
Pumo5g03929 125 Pfam EF-hand domain pair 48 99 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03929 Pumo-Chr5 89412408 89412785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03929 12 120 EF-hand Containing Proteins AT2G46600 66.055 1.02e-48 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03929 K24345 - gmx:100787197 211.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03929 5 89412408 89412785 Pumo7g00627 7 10259593 10260922 PCT