Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03880 ATGGCTTCGGAGACGAAGATCGTGAATCTCGCTGAGGAAGCCAAGCTCGCCAGAGAAGGTGTCAAGGCTCCCACCTATGCTTTTACCAGCATCTGCAAGTCCCTCGTCGCTGGTGGAGTCGCCGGAGGAGTATCACGAACGGCAGTTGCTCCACTGGAACGGTTGAAGATTTTGCTACAGGTTCAGAATCCACACAACATAAAATACAATGGAACAATTCAAGGTCTAAAATATATATGGAGAACTGAAGGTGTTCGTGGGCTGTTCAAAGGGAATGGTACTAATTGTGCTCGAATTGTCCCAAATTCTGCGGTGAAGTTCTTCAGTTATGAGCAAGCTTCCAAAGGTATACTACATCTGTATCAGAAGCAAACTGGAAATGAGGATGCTCAGCTGACTCCTCTTTTACGTCTTGGGGCTGGAGCATGTGCGGGAATAATTGCCATGTCTGCAACTTATCCAATGGACATGGTTCGAGGCAGAATAACTGTACAGACAGAGAAGTCCCCTTACCAGTACAGAGGAATGTTTCATGCTCTGTCAACTGTACTCAGGGAAGAAGGTCCACGTGCTTTATATAAGGGCTGGCTTCCTTCAGTCATTGGAGTTATTCCTTATGTGGGTCTCAACTTTGCTGTGTATGAGTCTTTGAAAGATTGGTTAATTAAATCTAATCCATTTGGTCTATTTCAAGATTCTGAGTTGAGTGTGACAACTCGCCTGGCTTGTGGTGCCGCAGCTGGAACTATTGGACAAACTGTTGCTTACCCTCTTGATGTCATTCGTCGAAGAATGCAGATGGTGGGTTGGAACCATGCTGCCTCTGTTGTAGCTGGTGATGGAAGAGGGAAGGTACCGCTTGAATACACTGGCATGATTGATGCTTTTAGGAAAACTGTTCGGTATGAGGGATTTGGCGCATTATACAAAGGTCTGGTGCCGAATTCTGTGAAGGTGGTCCCATCCATAGCAATTGCGTTTGTAACATATGAGGTGGTGAAGGACGTTTTAGGAGTGGAGATCAGAATATCAGACTGA 1038 0.4576 MASETKIVNLAEEAKLAREGVKAPTYAFTSICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPHNIKYNGTIQGLKYIWRTEGVRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILHLYQKQTGNEDAQLTPLLRLGAGACAGIIAMSATYPMDMVRGRITVQTEKSPYQYRGMFHALSTVLREEGPRALYKGWLPSVIGVIPYVGLNFAVYESLKDWLIKSNPFGLFQDSELSVTTRLACGAAAGTIGQTVAYPLDVIRRRMQMVGWNHAASVVAGDGRGKVPLEYTGMIDAFRKTVRYEGFGALYKGLVPNSVKVVPSIAIAFVTYEVVKDVLGVEIRISD 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03880 345 ProSiteProfiles Solute carrier (Solcar) repeat profile. 132 220 IPR018108 -
Pumo5g03880 345 ProSiteProfiles Solute carrier (Solcar) repeat profile. 235 336 IPR018108 -
Pumo5g03880 345 PANTHER SOLUTE CARRIER FAMILY 25 30 339 - -
Pumo5g03880 345 SUPERFAMILY Mitochondrial carrier 30 332 IPR023395 -
Pumo5g03880 345 FunFam Mitochondrial substrate carrier 27 339 - -
Pumo5g03880 345 Pfam Mitochondrial carrier protein 30 116 IPR018108 -
Pumo5g03880 345 Pfam Mitochondrial carrier protein 132 224 IPR018108 -
Pumo5g03880 345 Pfam Mitochondrial carrier protein 234 337 IPR018108 -
Pumo5g03880 345 Gene3D Mitochondrial carrier domain 27 339 IPR023395 -
Pumo5g03880 345 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 116 IPR018108 -
Pumo5g03880 345 PRINTS Mitochondrial carrier protein signature 47 61 IPR002067 GO:0055085
Pumo5g03880 345 PRINTS Mitochondrial carrier protein signature 193 211 IPR002067 GO:0055085
Pumo5g03880 345 PRINTS Mitochondrial carrier protein signature 244 266 IPR002067 GO:0055085
Pumo5g03880 345 PRINTS Mitochondrial carrier protein signature 147 165 IPR002067 GO:0055085
Pumo5g03880 345 PRINTS Mitochondrial carrier protein signature 34 47 IPR002067 GO:0055085
Pumo5g03880 345 PRINTS Mitochondrial carrier protein signature 91 111 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03880 Pumo-Chr5 88855214 88860481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03880 35 340 EF-hand Containing Proteins AT5G51050 39.739 7.61e-68 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03880 K14684 - gmx:100777048 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03880 5 88855214 88860481 Pumo7g00683 7 11357710 11363582 PCT