Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03853 ATGGCAACGCGGGGTGCACACTCAATGTTGTTATCCCATGGGGAAGGCACAGGCACTCCCAATGTATATATAAAATCAGGACTTACGGTTAGAGGTGATTTAAGGTTTCACAGAACAAGAGGGTTTAAATATGCTCTTAATGTGGTAGTGCTCAAAGTGTTGTCCACCGCCAGAAAGCCAACACGCTTATGCTTGTTAAGACCTTATTGCACTTTGGGGGGGCAACACAACCTAGGCCAAGGGAAAGGAAAAGGATATTCTTCTCCCACTAGTACACAAATACCGCGGATATTCAAATTTGCGACAGATCGAATGCTTGTTTTTCTCAAGGATTGGAGTAATTTACGCACCATGGCAGTAGCTGGCATACTGGTATCCATTTTAATGATCATTCCATCAGCTGATGCTGTTGACGCTCTCAAAACTTGTGCTTGCTTGTTGAAGGATTGCAGGATAGAATTGGCTAAGTGTCTTTCCAACCCATCTTGTGCTGCCAATATTGCTTGTCTCCAAACTTGCAACAATCGACCCGATGAGACCGAATGCCAAATTAAATGTGGGGACCTGTTTGAAAACAGTGTGGTTGATGAATTCAATGAGTGTGCAGTCTCACGGAAGAAATGTGTACCTAAGAAATCTGATGTGGGAGAATTTCCTGCTCCAAACCCTGATGTCCTTGTTCAGAGCTTTAACATTGCTGATTTCAGTGGCAAGTGGTTCATCACTAGTGGCTTAAATCCTACCTTCGATACCTTTGACTGCCAATTACATGAATTTCACACAGAATCCAACAAACTTGTGGGTAATTTGTCATGGAGAATACGGACTCCAGATGCTGGATTTATTACTAGGTCCACTGAGCAGAGATTTGTACAAGATCCTTCCTATCCTGGGATCCTTTACAATCATGACAATGAGTACCTTAACTATCAAGATGACTGGTATATTTTGTCATCAAAGATTGAGAATAAACCAGATGACTACGTATTTGTATACTACCGAGGCAGAAACGATGCATGGGATGGTTATGGAGGTGCTGTTGTATACACAAGAAGTGCAGTTTTGCCTGAATCTATAGTTCCTGAACTTGAAAAGGCAGCTAAGAGTGTGGGAAGAGACTTCAGCAAGTTCATCAAGACAGATAACACATGTGGACCAGAGCCTTCCCTGGTGGAAAGGCTGGAGAAAAAGGTAGAGGAAGGAGAGGAGACCATTGTAAGGGAAGTTGAACAGTTAGAAGAAGAGGTAGAAAAGGTGGGGAAAACGGAGGTCACCTTGTTTCAGAAGTTGGCAGAAGGGTTCAAAGTATTTCAAGAAGATGAGGAAAATTTCTTAAGAGAGCTATCAAAAGAAGAAATGGAGATACTTGACGGGCTCAAAATGGAAGCCAGTGAAGTAGAGAAGCTCTTTGGACGTGCCTTGCCGATAAGGAAACTAAGATAA 1443 0.4262 MATRGAHSMLLSHGEGTGTPNVYIKSGLTVRGDLRFHRTRGFKYALNVVVLKVLSTARKPTRLCLLRPYCTLGGQHNLGQGKGKGYSSPTSTQIPRIFKFATDRMLVFLKDWSNLRTMAVAGILVSILMIIPSADAVDALKTCACLLKDCRIELAKCLSNPSCAANIACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPKKSDVGEFPAPNPDVLVQSFNIADFSGKWFITSGLNPTFDTFDCQLHEFHTESNKLVGNLSWRIRTPDAGFITRSTEQRFVQDPSYPGILYNHDNEYLNYQDDWYILSSKIENKPDDYVFVYYRGRNDAWDGYGGAVVYTRSAVLPESIVPELEKAAKSVGRDFSKFIKTDNTCGPEPSLVERLEKKVEEGEETIVREVEQLEEEVEKVGKTEVTLFQKLAEGFKVFQEDEENFLRELSKEEMEILDGLKMEASEVEKLFGRALPIRKLR 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03853 480 PANTHER VIOLAXANTHIN DE-EPOXIDASE, CHLOROPLASTIC-RELATED 96 469 IPR044682 GO:0010028|GO:0046422
Pumo5g03853 480 SUPERFAMILY Lipocalins 219 388 IPR012674 -
Pumo5g03853 480 CDD lipocalin_VDE 214 388 - -
Pumo5g03853 480 ProSitePatterns Lipocalin signature. 231 242 IPR022272 -
Pumo5g03853 480 Gene3D - 213 395 IPR012674 -
Pumo5g03853 480 Coils Coil 391 422 - -
Pumo5g03853 480 Pfam VDE lipocalin domain 142 382 IPR010788 GO:0046422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03853 K09839 - gmx:100778118 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03853 5 88573643 88577185 Pumo5g03853 5 88573643 88577185 ECH