Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03592 ATGTCCTGTTTCCTACGAAAATCCCTTAGGACTAAGACTAAGGGGTTGTCCCTGTTTCTGCACAAACTCGTCGGAAACTCGTCCGAGTCGCATCACATTCTGGTGTCACATTCCCTTCCCCACAGAACCAGTCCTTGGTTGGCTTCAAATAAGGTTCCAAGTGGCAGCTACTCCCAAATTCGGTTTTGGGCCTCTGAGGCCGCGGCCACTGAACCCTCAACCTCTGATGGGCTCACGGTCCAAGGAATTCTGGCCAACAATTGGACCATTCTGGACGAAAACGACGGCGATTGGAAGAGTCATGCCACCGCCATAGCTCAATCTATTCATTTGATCAAACGCCGCTTACAGTGGGAAAAATTGAAGGTGAGGTTGGATATGTTATCATTCCAGCTGGGTAAGGAAGACCTTTGGGATGATCCGGTGCGTGCAGGTAAAATAAGCCGAGAGCATGGTTCGCTCCTGGGAAAAATGAAAGAGGTAAATGCATTTGAACAAGATTTACTTGAGCATGTTGACATGATAAAGCTTGCGCGCGAAGAGAACGATGCAGATTTGGAATCGGAATCATTGAAAGCGTTGCTTAACATGAGAAGAAATGCAAAAGAGAAAGAGCTAGAGGCATTGCTTTCTGGGGAGCAAGATTCTTGTTCATGCTACATTGAGGTTCAAGCTGGGGCTGGGGGTACTGAGAGCATGGACTGGGCTGCAATGGTCATGCAGATGTATAAGTCATGGGCACAGCGACGTGGATATAAAGTAAATGTAATGGATGAAATGCCTGGTGAGATTGCAGGAATCAAGCGAGCTACCATCAAAGTAGATGGTGAGTTTGCATTTGGATATGCCAAAGCAGAAATAGGAGTGCACAGGCTGGTGCGCATATCACCTTTTGACAGTAATAAGCGCCGGCATACTTCATTTGCTGCTGTGGCTGTGATTCCTATCCTTGGTGATGGATCTACCCACGTACAAATTAATGAATCTGATCTTCGAATTGAACGATTTCGTGCTGGTGGTGCTGGTGGCCAACATGTTAACACAACTGAGAGTGCTGTAAGAATAATCCATATTCCTACAGGAGTTACCGCAACTTGTCAAAATGAAAGATCGCAGCATCAGAATAAGGCTTCAGCGATGGCTGTACTTCAGTCAAGATTAGATCAACTGGAGATGGCACGCCAGGCACAGTTGAATGCACAACATACACAATCTCTCACTGACATAACATGGGGCAGTCAGATTCGTAGTTATGTTCTCCATCCTTACCGTATGGTGAAAGATGTTAGAACTAACTACGAGGTTTCAGATCCTGACTCTGTCCTTGAGGGAGATCTAGACGGTTTTATCTTGAGCTATTTATCAGTTTCTTTAGATAAAGATGACGATGCTTAA 1395 0.4559 MSCFLRKSLRTKTKGLSLFLHKLVGNSSESHHILVSHSLPHRTSPWLASNKVPSGSYSQIRFWASEAAATEPSTSDGLTVQGILANNWTILDENDGDWKSHATAIAQSIHLIKRRLQWEKLKVRLDMLSFQLGKEDLWDDPVRAGKISREHGSLLGKMKEVNAFEQDLLEHVDMIKLAREENDADLESESLKALLNMRRNAKEKELEALLSGEQDSCSCYIEVQAGAGGTESMDWAAMVMQMYKSWAQRRGYKVNVMDEMPGEIAGIKRATIKVDGEFAFGYAKAEIGVHRLVRISPFDSNKRRHTSFAAVAVIPILGDGSTHVQINESDLRIERFRAGGAGGQHVNTTESAVRIIHIPTGVTATCQNERSQHQNKASAMAVLQSRLDQLEMARQAQLNAQHTQSLTDITWGSQIRSYVLHPYRMVKDVRTNYEVSDPDSVLEGDLDGFILSYLSVSLDKDDDA 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03592 464 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 337 353 IPR000352 GO:0003747|GO:0006415
Pumo5g03592 464 NCBIfam peptide chain release factor 2 104 454 IPR004374 GO:0005737|GO:0006415|GO:0016149
Pumo5g03592 464 Gene3D - 221 450 - -
Pumo5g03592 464 SMART PCRF_a_2 176 286 IPR005139 GO:0006415
Pumo5g03592 464 Pfam RF-1 domain 323 430 IPR000352 GO:0003747|GO:0006415
Pumo5g03592 464 Gene3D - 317 413 - -
Pumo5g03592 464 SUPERFAMILY Release factor 122 457 IPR045853 -
Pumo5g03592 464 Pfam PCRF domain 123 311 IPR005139 GO:0006415
Pumo5g03592 464 Hamap Peptide chain release factor 2 [prfB]. 94 458 IPR004374 GO:0005737|GO:0006415|GO:0016149
Pumo5g03592 464 Gene3D Release factor 97 207 - -
Pumo5g03592 464 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 96 455 - -
Pumo5g03592 464 Coils Coil 380 400 - -
Pumo5g03592 464 FunFam Peptide chain release factor 1 320 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03592 Pumo-Chr5 85415076 85418192 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03592 K02836 - gmx:100797427 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03592 5 85415076 85418192 Pumo5g03592 5 85415076 85418192 ECH