Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03580 ATGGGGTTTCAAAATTTGGTATTGATGACTTTTATGATGACATTGATTATCGGTCAATATGAGAGTTGCAATGATACCATTCATTCTCATCATCACTTACACAAAAATTTAGCTACCAAAATTACTAATGTTAATGGTTTCATTCAACGAAGTGGCACCCGTTTTCTTCTAAATGGGAAGCCACACTACTTCAACGGATTCAATGCCTATTGGTTAATGACTATGGCATCCGACCCATCTACAATTTCTAAGGTCACTACAACTTTTCAAGAAGCTTCCCAACATGGTTTGAATGTAGCAAGAACTTGGGCATTCAACGATGGAGGTTACAAAGCCCTTCAAATTTCTCCCGGTTCTTATAACGAGAATGTTTTTAAGGGATTGGATTTTGTGATATCACAAGCAGGAAAAAGTGGGGTACGACTGATACTAAGCCTAGTAAATAACTGGAACGACAATGGTGGGAAAAAACAATATGTTCAATGGGCAAGGGAGCATGGTCAAAGAATAAACAACGACGATGACTTCTTCTCACACCCCGTCGTTAAGCAATACTACAAAAATCATGTCAAGACTATATTAACAAGAAAGAATACTATAACTGGATTAATATATAAGGACGACCCAACCATTTTCGCATGGGAGCTTATGAATGAACCTCGTTCTTTAGAGCTATTTGGAAAACAAATTCAGGATTGGGTGAGGGAAATGGCTGCCTATGTAAAGTCCATTGATAACAATCATTTACTCGAAATAGGGCTTGAAGGATTTTATGGTGAATCGATGCCAGAAAAGAAACTATTCAATCCTGGATACCAAATAGGAACTGATTTCATTTCTAACAACCAAGTTCCCGAAATTGATTTTGCCACCATCCATCTCTACCCTCAATGGATGTCGAGGTTTAACGAATCAGCACAAGATGTCTTTATTAACAAATGGGTCCAAGTCCATATTCAAGACTCAAATGATATTTTGCGAAAACCCATTCTTTTAACCGAGTTTGGGCTTTCTTCAAAGATTTTAGGATATAGCGTGGACAAAAGGAATAGTTTGTTTGAGAAACTTTACAGTTTGATATACAATAGTGCTAGTACTAGGGGGCCATGTGTGGGTGGACTATTTTGGCAACTATTGTCCCAAGGAATGGATGGCTTCCGTGATGGCTATGAAGTCGTTTTCGAGGAGGGTGCTACAACCGTCAATGTCATCACTCAACAATCTAAAAAGATGTCAAGTCTTGGATAG 1248 0.383 MGFQNLVLMTFMMTLIIGQYESCNDTIHSHHHLHKNLATKITNVNGFIQRSGTRFLLNGKPHYFNGFNAYWLMTMASDPSTISKVTTTFQEASQHGLNVARTWAFNDGGYKALQISPGSYNENVFKGLDFVISQAGKSGVRLILSLVNNWNDNGGKKQYVQWAREHGQRINNDDDFFSHPVVKQYYKNHVKTILTRKNTITGLIYKDDPTIFAWELMNEPRSLELFGKQIQDWVREMAAYVKSIDNNHLLEIGLEGFYGESMPEKKLFNPGYQIGTDFISNNQVPEIDFATIHLYPQWMSRFNESAQDVFINKWVQVHIQDSNDILRKPILLTEFGLSSKILGYSVDKRNSLFEKLYSLIYNSASTRGPCVGGLFWQLLSQGMDGFRDGYEVVFEEGATTVNVITQQSKKMSSLG 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03580 415 Pfam Cellulase (glycosyl hydrolase family 5) 59 340 IPR001547 GO:0004553|GO:0071704
Pumo5g03580 415 PANTHER - 6 414 IPR045053 GO:0004553
Pumo5g03580 415 FunFam Mannan endo-1,4-beta-mannosidase 6 44 415 - -
Pumo5g03580 415 Gene3D Glycosidases 43 415 - -
Pumo5g03580 415 SUPERFAMILY (Trans)glycosidases 47 401 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03580 Pumo-Chr5 85221610 85224045 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03580 37 412 Glycoside Hydrolase AT5G66460 55.556 8.74e-156 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03580 K19355 - gmx:100788081 730.709