Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03577 ATGGGGACTGAAAATCCTGGTCGTCCTACCTTCCCTTCAAGACCTGCTTCATCGCCTTTTGCTGCTGCGCAGACAGTGACGCCTTTTTCATCAACCGGTCCCGTGGCTGGATCAGAGCCTCCTTCTTTTCGGCCTAGTCCTCCGACTCCTCAGCCGCAAGCTGCCACACCGTTTTCATCGGCTGGACCTGCTGCAGTTAGACCTGGGGCACCCAGTTTTAGACCTGCACCACCAGGGAGGTTCAATGATCCATCAGTACCGCCTCCTGTGCGATCATCCAATGCCCCACCGGCTGCTGGACCTTTTCAGCAGTTTCCGGCACCGCCCTTTCCCCCAACAATGCAGCCACGTGCTCCTCCGCTGCCAATGGGACCGCCATCAATTCAATCTCCACCTAGTCAAGCACCGCCTTTTCCCATGTCTCTTCCAGCTCAGCCACAGATGCCTTCTGTTCCAATGGGCTCTCCCCCACCACAAAGTGCTGCTCCTGCACATTTAGGTTCAAATGTTCCTCCATCGCCTACATTTCAGCCATCTTTTCCTGGGTACCCGAGTAAGCAGGCTGGTCCTGAAATGCAAGCTCCACCTATGCATTCCTCGTTCCCTGCTAATCAAGGAAATTTTGGGCCTGTCCCACCCGCAGCGTCTTCTCCTTTTTTGTCTCATCAAGGAGGCTATGTTCCACCACCCCCAATGGCTCCCCCGCTAGGTATCCAGCCAATGCAGCAGCCAGGATCTGTGCCCCCAATGGGTGCCGTTCAGGGCTTGGCAGAAGACTTCAACGCGCTCACTATGCAAACTCGTCCTGGAACGATGGATCCATTATTTGATGCCAAGGAACTTCCAAGGCCATTGGAAGGTGATGTTGAACCAAAGAATTTGGTTGACATGTATCCCATGAACTGCAATCCCCGGTATCTAAGACTCACAACCAGTGCTGTTCCTAGCTCCCAGTCCTTGGCTTCAAGGTGGCATCTTCCTCTTGGAGCAGTTGTATGTCCGCTTGCTGAACCTCCTGATGGGGAAGAGGTGCCTATAGTTAATTTTGCTCCAGCAAGTGTTGTCCGCTGCAGAAGATGTCGCACATATGTGAATCCTCATATGACATTTACGGAAGCTGGAAGAAAGTTCCGTTGCAACGTCTGTACCTTGCTTAATGATGTTCCTAGTGAATATTATGCACAATTAGATGCAACTGGAAAAAGAGTTGATATAAATCAACGACCTGAGCTTACAAAGGGGACTGTAGAATTTGTTGCCCCTGCTGAGTATATGGTGCGGCCTCCTATGCCACCAGTGTATTTCTTTCTCATCGATGTTTCCATATCTGCTGTTAGAAGTGGCATGATTGAGGTTGTGGCCAATACAATCAAGTCATGCTTAGATGAGCTGCCCGGCTTTCCACGTACACAAATAGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAACATGAAGTCTTCCTTGACTCAACCACAGATGTTGGTAGTGTCAGATCTGGATGATATATTTATTCCACTGCCAGATGATCTTCTTGTTAACTTGTCTGAATCAAGAAGTGTGGTAGAAACCTTCCTAGATAGTTTGCCAACCATGTTCCAGGACAATGTTAACTTGGAATCAGCTTTTGGTCCTGCTCTCAAGGCTGCGTTTATGGTTATGAGTCAACTTGGAGGGAAATTGTTAATATTTCAAAACACACTCCCATCTCTTGGTGTTGGCCGCTTGAAGTTACGTGGAGATGATTCTCGTGTTTATGGGACAGACAAAGAACATGGACTTAGACTGCCTGAAGATCCATTCTATAAACAAATGGCTGCTGAGTTTTCCAAATACCAAATCTCAGCAAATGTGTATGCATTCAGTGATAAGTACACTGACATAGCCTCCTTAGGAACTCTGGCAAAGTATACTGCTGGTCAAGTGTATTACTATCCAGCTTTCCAATCAGCCATTCATGGGGAGAAATTGAGACATGAATTAAGGAGAGACCTTACCAGAGAAACTGCATGGGAAGCTGTAATGCGAATTAGATGTGCAAAAGGTGTTCGCTTCACAACTTATCATGGAAACTTCATGCTAAGGTCCACCGATTTGTTAGCACTTCCTGCTGTAGATTGTGATAAAGCCTTTGCCATGCAGTTATCACTTGAAGAGACATTATTGACAACTCAGACTATGTATTTCCAAGTTGCATTGCTATATACTGCATCTTGTGGTGAAAGGCGAATAAGAGTACACACAATGGCAGTTCCAGTAGTTACAGAGTTGGCAGATATTTATCGCCTGGCTGATACCGGTGCAATTGTATCACTGTTAAGTAGGCTAGCAATTGAGAAAACATTGTCCCAAAAACTGGAAGACGCACGGACTGCTGTTCAACTAAGAATTGTGAAAGCCCTCAGGGAATATCGAAATCTTTATGCTGTGCAACATCGCTTGGCCAACAGAATGATATATCCCGAGTCTTTAAAGTACTTAATGTTGTATGGATTAGCCGTTTGTAGATCAACAGCTCTACGTGGAGGGTATGGCGATGTTCCACTGGATGAACGATGTGCAGCAGGACACATAATGATGACTGTATCAATAAAAAGACTGTTGAAACTTCTCTATCCTAGCTTGATTCGACTTGATGAATATCTTCTGAAGGCATCTGTACAGGCTGATGACTTAAAAACTGTTGAGAGAAGGTTATCTTTGACTGGGGAGAGCTTAGACTCTAGAGGCCTTTATATATATGATGATGGCTTCCGGTTCATTGTATGGTTTGGTAGGGTGATTTCACCTGATATAGCCAAGAATTTACTTGGGGCAGACTTTGCAGCTGAATTATCGAAGACTACTCTCAGTGACCATGATAATGAAATGTCAAGGAGGCTGGTGAAGGTACTTGAGAAGTTGAGAAATACAGATCGTGCATATTACCAGTTGTGCCACCTTGTGAGGCAAGGTGAACAACCCAAAGAAGGATTCCTCCTACTTGCAAACCTTGTTGAGGACCAGATGGGTGGTAACAGTGGGTATGCTGAATGGATGCTGCAGATATCCCGACAAGTGCAGCAATCATAA 3075 0.4598 MGTENPGRPTFPSRPASSPFAAAQTVTPFSSTGPVAGSEPPSFRPSPPTPQPQAATPFSSAGPAAVRPGAPSFRPAPPGRFNDPSVPPPVRSSNAPPAAGPFQQFPAPPFPPTMQPRAPPLPMGPPSIQSPPSQAPPFPMSLPAQPQMPSVPMGSPPPQSAAPAHLGSNVPPSPTFQPSFPGYPSKQAGPEMQAPPMHSSFPANQGNFGPVPPAASSPFLSHQGGYVPPPPMAPPLGIQPMQQPGSVPPMGAVQGLAEDFNALTMQTRPGTMDPLFDAKELPRPLEGDVEPKNLVDMYPMNCNPRYLRLTTSAVPSSQSLASRWHLPLGAVVCPLAEPPDGEEVPIVNFAPASVVRCRRCRTYVNPHMTFTEAGRKFRCNVCTLLNDVPSEYYAQLDATGKRVDINQRPELTKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVVANTIKSCLDELPGFPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFIPLPDDLLVNLSESRSVVETFLDSLPTMFQDNVNLESAFGPALKAAFMVMSQLGGKLLIFQNTLPSLGVGRLKLRGDDSRVYGTDKEHGLRLPEDPFYKQMAAEFSKYQISANVYAFSDKYTDIASLGTLAKYTAGQVYYYPAFQSAIHGEKLRHELRRDLTRETAWEAVMRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDCDKAFAMQLSLEETLLTTQTMYFQVALLYTASCGERRIRVHTMAVPVVTELADIYRLADTGAIVSLLSRLAIEKTLSQKLEDARTAVQLRIVKALREYRNLYAVQHRLANRMIYPESLKYLMLYGLAVCRSTALRGGYGDVPLDERCAAGHIMMTVSIKRLLKLLYPSLIRLDEYLLKASVQADDLKTVERRLSLTGESLDSRGLYIYDDGFRFIVWFGRVISPDIAKNLLGADFAAELSKTTLSDHDNEMSRRLVKVLEKLRNTDRAYYQLCHLVRQGEQPKEGFLLLANLVEDQMGGNSGYAEWMLQISRQVQQS 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03577 1024 Pfam Sec23/Sec24 trunk domain 429 665 IPR006896 GO:0006886|GO:0006888|GO:0030127
Pumo5g03577 1024 SUPERFAMILY Helical domain of Sec23/24 766 873 IPR036175 GO:0006886|GO:0006888|GO:0030127
Pumo5g03577 1024 Gene3D - 300 413 - -
Pumo5g03577 1024 SUPERFAMILY beta-sandwich domain of Sec23/24 190 764 - -
Pumo5g03577 1024 MobiDBLite consensus disorder prediction 1 253 - -
Pumo5g03577 1024 Gene3D Severin 874 1002 IPR029006 -
Pumo5g03577 1024 MobiDBLite consensus disorder prediction 224 242 - -
Pumo5g03577 1024 Pfam Sec23/Sec24 zinc finger 355 392 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Pumo5g03577 1024 SUPERFAMILY vWA-like 429 668 IPR036465 -
Pumo5g03577 1024 MobiDBLite consensus disorder prediction 17 37 - -
Pumo5g03577 1024 Gene3D - 302 754 - -
Pumo5g03577 1024 FunFam protein transport protein Sec24D isoform X1 431 668 - -
Pumo5g03577 1024 Pfam Sec23/Sec24 helical domain 766 869 IPR006900 GO:0006886|GO:0006888|GO:0030127
Pumo5g03577 1024 CDD Sec24-like 429 670 IPR041742 GO:0006886|GO:0006888|GO:0030127
Pumo5g03577 1024 PANTHER SEC24-RELATED PROTEIN 155 1021 - -
Pumo5g03577 1024 SUPERFAMILY Zn-finger domain of Sec23/24 345 428 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Pumo5g03577 1024 Gene3D Sec23/Sec24 helical domain 755 1021 - -
Pumo5g03577 1024 Pfam Sec23/Sec24 beta-sandwich domain 671 755 IPR012990 -
Pumo5g03577 1024 MobiDBLite consensus disorder prediction 70 159 - -
Pumo5g03577 1024 MobiDBLite consensus disorder prediction 40 54 - -
Pumo5g03577 1024 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 883 1023 IPR036180 -
Pumo5g03577 1024 Gene3D von Willebrand factor, type A domain 431 668 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03577 Pumo-Chr5 85191838 85200617 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03577 K14007 - gmx:100791083 1863.2