Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03576 ATGGCGAGGAAGAAGATCAGAGAGTACCACTCCAAGAGGCTCCTCAAGGAGCACCTCAAACGACTCGCTTCTATCGACCTCCACATCCTTTCAGCTCAGGTCACAGAATCAACGGACTTCACTGAGTTGACAGACCAGCATCCGTGGCTTTCGTCAACCAAACTGGTCGTGAAGCCGGACATGCTCTTCGGGAAGCGCGGAAAGAGTGGCTTAGTGGCTCTCAATTTGGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCGCGCCTCGGCCTTGAGGTTGAGATGGGAGGTTGCAAGGCGCCGATAACTACTTTCATCGTTGAACCGTTTGTTCCTCACCACCAAGAGTATTACCTGTCCATTGTTTCTGAAAGGCTTGGCTCCACCATCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAGGTTAAAACTATATTCCTTCCTACGGAAAAACCGTTGACTCCGGAGGCATGTGCGCCGTTGATTGCTACACTTCCTTTGGAGATTCGGGGGACAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCCAAGATCTGGACTTCAGTTTTCTAGAGATGAATCCATTTACACTGGTGAATGAAAAGCCATATCCACTGGATATGAGAGGGGAGTTGGATGACACTGCTGCATTCAAGAACTTCAACAAATGGGGTAATATAGAGTTTCCATTGCCTTTTGGAAGAGTTCTGAGCCCTACAGAAAGCTTCATTCATTCCTTGGATGATAAGACAAGTGCATCATTGAAATTTACTGTATTGAACCCAAAAGGACGCATCTGGACAATGGTAGCAGGAGGTGGTGCGAGCGTAATTTATGCTGATACGGTTGGAGATTTAGGCTATGCGTCAGAGCTTGGCAACTATGCCGAGTATAGTGGAGCTCCGAATGAGGAGGAGGTGTTGCAGTATGCAAGAGTTGTAATTGATTGTGCTACTGCAGACCCTGATGGCCGTAAGAGAGCCCTTCTAATTGGAGGTGGCATAGCAAACTTCACTGATGTTGCTGCCACATTCAATGGCATTATTCGAGCCCTGAAAGAGAAGGAATCAAAGCTTAAAGCAGCGCGAATGCACATCTATGTCAGAAGAGGTGGTCCAAACTATCAGACTGGTTTAGCAAAGATGCGTGCATTGGGGGAGGAATTGGGAGTACCAATTCAGGTTTATGGACCGGAAGCCACAATGACCGGTATCTGCAAACAGGCTATTGATTGCATCATGTCTGAAGCATAA 1272 0.4717 MARKKIREYHSKRLLKEHLKRLASIDLHILSAQVTESTDFTELTDQHPWLSSTKLVVKPDMLFGKRGKSGLVALNLDIAQVAEFVKARLGLEVEMGGCKAPITTFIVEPFVPHHQEYYLSIVSERLGSTISFSECGGIEIEENWDKVKTIFLPTEKPLTPEACAPLIATLPLEIRGTIGDFIMGVFAVFQDLDFSFLEMNPFTLVNEKPYPLDMRGELDDTAAFKNFNKWGNIEFPLPFGRVLSPTESFIHSLDDKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVAATFNGIIRALKEKESKLKAARMHIYVRRGGPNYQTGLAKMRALGEELGVPIQVYGPEATMTGICKQAIDCIMSEA 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03576 423 PANTHER SUCCINYL-COA SYNTHETASE BETA CHAIN 5 388 IPR005809 GO:0006099
Pumo5g03576 423 Gene3D - 240 422 IPR016102 -
Pumo5g03576 423 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 4 236 - -
Pumo5g03576 423 FunFam ATP-citrate synthase alpha chain protein 1 233 - -
Pumo5g03576 423 SUPERFAMILY Succinyl-CoA synthetase domains 259 403 IPR016102 -
Pumo5g03576 423 Pfam ATP-grasp domain 6 203 IPR013650 -
Pumo5g03576 423 Gene3D - 1 233 - -
Pumo5g03576 423 Pfam ATP citrate lyase citrate-binding 241 417 IPR032263 -
Pumo5g03576 423 FunFam ATP-citrate synthase alpha chain protein 240 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03576 Pumo-Chr5 85184606 85188369 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03576 1 420 Acyl Lipid Metabolism Gene Families AT1G09430 89.286 0.0 785
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03576 K01648 - gmx:100787551 823.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03576 5 85184606 85188369 Pumo5g03576 5 85184606 85188369 ECH