Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03567 ATGGGGCAAAAGCATTTACTCGCGGCTTTCTGTTTATGGGCTTTAACATGTTCCCTTCTTCCATCTTTCTCCTTTGGAATTCTGAGAATTGGTTTGAAGAAGAGACCTCTAGATCTTGATAGTATTAATGCTGCTAGAAAGGCAAGAGAAGGTCTAAGGTATGGAAGGCCGATGATGGGTGCACACAATCAGTATATTGGTAAGTCAAAAGGTGAAGATATAGTACCTTTGAAAAATTATTTGGACGCTCAATATTTTGGTGAGATTGGAATTGGCACACCCCCACAGCCCTTCACTGTTGTGTTTGATACTGGTAGTTCCAACCTTTGGGTTCCATCGTCAAAGTGCTACTTTTCTCTTGCCTGCTATACCCACAGTTGGTACAAGGCAAAGAAATCAAAGACATATGTAAAAAATGGAACATCATGTAAAATAAACTATGGAACTGGATCAATATCTGGTTTCTTCAGTCAAGATCATGTTAAAGTTGGCAGTGCTGTTGTCAAGCATCAGGATTTCATTGAGGCTACCCGAGAAGGAAGTCTTACCTTTCTGTCAGCAAAGTTTGATGGAATACTGGGACTTGGATTTCAGGAGATCTCAGTTGAAAATGCAGTGCCAGTATGGTACAAAATGGTGGAGCAAAAACTTATCAATGAGAAGGTGTTCTCTTTTTGGCTTAATGGGGACCCAAATGCAAAAAAAGGTGGTGAATTAGTTTTTGGTGGTGTTGACCCAAAGCACTTCAAAGGAAACCACACTTATGTTCCAATTACTGAAAAAGGTTACTGGCAGATTGAAATGGGAGATTTTTTCATTGGAGGTGTTTCAACAGGTGTTTGTGAGGGTGGCTGTGCTGCTATTGTGGATTCAGGAACATCTTTGCTTGCTGGTCCAACTCCTGTTGTGGCTGAAATCAACCATGCTATTGGAGCTGAAGGAGTTCTCAGTGTAGAATGTAAGGAAGTCGTTTCTCAATATGGAGAGTTGATATGGGATCTCTTGGTATCAGGGGTGAAACCTGATGACATATGTTCACAAGTTGGTTTATGTTCTTTCAAAAAGCATCAGTCTAAGAGGTTAGATAGATCTTTACTTGATGGCCCTTCAGGAGATAATCCTTTGTGTTCTTCTTGTCAGATGCTTGTTCTTTGGATCCAGAATCAACTAAAACAAAAGGCAACAAAGGACAGAGTATTCAACTATGTGAATCAACTGTGTGAGAGCCTGCCAAGTCCATCTGGAGAGTCAGTGATAAGCTGTAATAGTCTTTCCAAGATGCCAAACATTACATTCACAATTGGAAATAAACCTTTTGTCCTCACACCAGAGCAGTATATTCTGAGAACTGGGGAAGGCATTACAGAAGTCTGCCTTAGCGGGTTTATTGCTTTTGATGTTCCTCCTCCAAAGGGTCCATTGTGGATTCTTGGCGATGTTTTCATGAGGGCATATCACACCATCTTTGACTACGGAAATCAACAAGTTGGTTTTGCCGAAGCTGCCTAA 1509 0.4095 MGQKHLLAAFCLWALTCSLLPSFSFGILRIGLKKRPLDLDSINAARKAREGLRYGRPMMGAHNQYIGKSKGEDIVPLKNYLDAQYFGEIGIGTPPQPFTVVFDTGSSNLWVPSSKCYFSLACYTHSWYKAKKSKTYVKNGTSCKINYGTGSISGFFSQDHVKVGSAVVKHQDFIEATREGSLTFLSAKFDGILGLGFQEISVENAVPVWYKMVEQKLINEKVFSFWLNGDPNAKKGGELVFGGVDPKHFKGNHTYVPITEKGYWQIEMGDFFIGGVSTGVCEGGCAAIVDSGTSLLAGPTPVVAEINHAIGAEGVLSVECKEVVSQYGELIWDLLVSGVKPDDICSQVGLCSFKKHQSKRLDRSLLDGPSGDNPLCSSCQMLVLWIQNQLKQKATKDRVFNYVNQLCESLPSPSGESVISCNSLSKMPNITFTIGNKPFVLTPEQYILRTGEGITEVCLSGFIAFDVPPPKGPLWILGDVFMRAYHTIFDYGNQQVGFAEAA 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03567 502 Pfam Saposin-like type B, region 1 374 411 IPR007856 GO:0006629
Pumo5g03567 502 SMART sapb_4 279 351 IPR008139 -
Pumo5g03567 502 Gene3D Acid Proteases 28 243 IPR021109 -
Pumo5g03567 502 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 100 111 IPR001969 GO:0004190|GO:0006508
Pumo5g03567 502 ProSiteProfiles Saposin B type domain profile. 372 413 IPR008139 -
Pumo5g03567 502 Pfam Saposin-like type B, region 2 319 351 IPR008138 -
Pumo5g03567 502 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 18 500 IPR001461 GO:0004190|GO:0006508
Pumo5g03567 502 ProSiteProfiles Peptidase family A1 domain profile. 85 499 IPR033121 -
Pumo5g03567 502 SUPERFAMILY Saposin 316 411 IPR011001 -
Pumo5g03567 502 Gene3D Acid Proteases 244 502 IPR021109 -
Pumo5g03567 502 Pfam Eukaryotic aspartyl protease 84 501 IPR033121 -
Pumo5g03567 502 SUPERFAMILY Acid proteases 17 501 IPR021109 -
Pumo5g03567 502 Gene3D - 315 411 - -
Pumo5g03567 502 ProSiteProfiles Saposin B type domain profile. 315 355 IPR008139 -
Pumo5g03567 502 CDD phytepsin 75 500 IPR033869 GO:0004190
Pumo5g03567 502 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 287 298 IPR001969 GO:0004190|GO:0006508
Pumo5g03567 502 FunFam Lysosomal aspartic protease 375 501 - -
Pumo5g03567 502 FunFam Lysosomal aspartic protease 71 313 - -
Pumo5g03567 502 FunFam Aspartic proteinase A1 315 411 - -
Pumo5g03567 502 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Pumo5g03567 502 PRINTS Pepsin (A1) aspartic protease family signature 475 490 IPR001461 GO:0004190|GO:0006508
Pumo5g03567 502 PRINTS Pepsin (A1) aspartic protease family signature 237 250 IPR001461 GO:0004190|GO:0006508
Pumo5g03567 502 PRINTS Pepsin (A1) aspartic protease family signature 287 298 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03567 Pumo-Chr5 85099900 85103501 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03567 K08245 - gmx:548009 963.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03567 5 85099900 85103501 Pumo5g03567 5 85099900 85103501 ECH
Pumo5g03567 5 85099900 85103501 Pumo3g02074 3 32266094 32272465 PCT