Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03543 ATGTTGTTCTCAGCACGAAGCACTATGGGTTGGAATGGATGTCTCAAAAACATGGTCATGATGTTTGCTTTTATGGTGGCCTTGGTTGTTGTTCAACACGTGAAGTGTGGGGACTCAGCTCGCATATTGCTTCAGCATGGTGGCTTCGTTCAACGAAGTGGCACCAATTTCGTTCTGAATAACAGGCGTTTTTACTTCAACGGATTCAACGCCTATTGGTTAATGTATATGGCAACTGACCCAGCCACAAGGCCCAAGGTCACTAGCGTTTTGCAACAAGCTTCCAGCCATGGTTTAACTGTTGCTAGAACTTGGGCTTTCAGTGATGGAGGTTACAGGGCACTTCAGGTTTCTCCCGGTGCCTATGACGAAAAAGTATTCCAGGGATTGGACTTTGTAGTATCAGAAGCGGGAAAACATGGGGTGCGTTTGATACTGAGTTTGGTGAACAACTGGAAAGATTTTGGTGGGAAAAATCAGTATGTTGAATGGGTGAAGGAACATGGACAGTACGTGAACAGCGAAGATGATTTCTTTTCACATCCAATTGCTAAGCAACACTACAAAAACCATATTAAGGCTGTGCTGACAAGAAAAAACACTATAACTGGGGTGGCATATAAGGACGATCCTGCCATATTTGCGTGGGAACTTATGAATGAACCCCGTTCCCAACACGACAACTCCGGAAAAGTTATTCAGCAATGGGTGATTGAGATGGCTGCCTACGTCAAATCCATCGATAGCAATCATTTGCTGGAAATAGGACTCGAAGGGTTCTATGGTGAAACAATGCCAGAGAAAAAACAATTCAATCCTGGGTACCAACTTATTGGTACTGATTTCATTTCTAACAACCTAGTTCACCAAGTTGATTTTGCTACGATGCATCTCTACCCTGAACAATGGTTGCCAGGTTCAAACGAAGCTGCTCAGGTTGCATTTGTTGACAAATGGTTACAAACACATATTCAAGATGTCAAAAATGTTCTGGGGAAGCCTGTTGTTGTTGGTGAGTTTGGCAAGTCTTCGAGGTCATATAGTGTGGTTGAAAGGGACAATTACTTGAGCAAAATGTATAATGCCATATACAGTAGTGCTAGTAGTGGGGGACCCTGTGCGGGTGGGCTTTTTTGGCAGCTCATGGCTCAAGGAATGGATGGTTTCCGTGATGGTTATGAAGTTATTTTTGAGGAGAGTCCTTCAACTACCAGAATTATAGATCAACAATCCCACAAAATGTCAAGTATTGCTTAG 1257 0.432 MLFSARSTMGWNGCLKNMVMMFAFMVALVVVQHVKCGDSARILLQHGGFVQRSGTNFVLNNRRFYFNGFNAYWLMYMATDPATRPKVTSVLQQASSHGLTVARTWAFSDGGYRALQVSPGAYDEKVFQGLDFVVSEAGKHGVRLILSLVNNWKDFGGKNQYVEWVKEHGQYVNSEDDFFSHPIAKQHYKNHIKAVLTRKNTITGVAYKDDPAIFAWELMNEPRSQHDNSGKVIQQWVIEMAAYVKSIDSNHLLEIGLEGFYGETMPEKKQFNPGYQLIGTDFISNNLVHQVDFATMHLYPEQWLPGSNEAAQVAFVDKWLQTHIQDVKNVLGKPVVVGEFGKSSRSYSVVERDNYLSKMYNAIYSSASSGGPCAGGLFWQLMAQGMDGFRDGYEVIFEESPSTTRIIDQQSHKMSSIA 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03543 418 Pfam Cellulase (glycosyl hydrolase family 5) 68 362 IPR001547 GO:0004553|GO:0071704
Pumo5g03543 418 PANTHER - 19 417 IPR045053 GO:0004553
Pumo5g03543 418 Gene3D Glycosidases 45 418 - -
Pumo5g03543 418 FunFam Mannan endo-1,4-beta-mannosidase 6 46 418 - -
Pumo5g03543 418 SUPERFAMILY (Trans)glycosidases 49 408 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03543 Pumo-Chr5 84761304 84765677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03543 21 417 Glycoside Hydrolase AT5G66460 54.637 3.84e-161 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03543 K19355 - gmx:778029 803.127