Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03508 ATGGTTCTTAAGGTCCAATCTCCAGTGCGGTGCCTTCTGTACTCAATGCGATTATGGGGTCACAATCTTGAAGTTCTCCAAATTGCGTCCGGTGCAATATTTAATGAGATTATTGTTTGGAAAGTTGCCCCTCAACACAATAAATCTTCAAGTCATCAAGAAAACCATGATCATCAGAGCATTTCATCCTCCAATTGCTGCCAGATAAAGGATCAACTGTATGAGGCAATTCATGTATGTAAACTTATTGGACATGAAGGTTCAATCTTCCGAATAGCATGGTCGTCTTGTGGATCTAAACTGGTATCTGTCTCTGATGATCGGAGTGCACGTGTTTGGGCTGTTGCTATTGAAAGGGAACATTCATTGTGCCATGATCCTGTTGCCCTTGTCTTATTTGGACATAATGCTCGGGTTTGGGACTGCTGTATTTATGATAATTTGATTATCACTGTCAGTGAGGATTGTACATGTCGTATATGGGGAGTTGATGGTAAACAACTGCAAGTCATTAAGGAGCACATTGGACGGGGTATATGGAGATGTTTGTATGACCCAAATTCATCACTTCTTATAACTGCTGGCTTTGACTCTGCTATTAAAGTACATCAACCTCAAGCTTCTCTGCCCAGGGGCTTGGAAGCAGCACAAGGGTCCCCTGGTAGGACAGATATGTTTTCCATTTGCGTCCCTAATGTGTTGGATCATATTGGATTTATGGACAGCAAGAGTGAATATGTTCGATGTTTGCGCTTTTCCTGTCAGGATTCTCTTTATGTTGCTACCAATCATGGTTATCTCTACCATGCTAAATTATGTGATACTGGAGGTGCTCAGTGGAATCAACTTGTCCAGGTCAGCAATGGAGCACCAATTATCTGTATGGATTTATTGTCCAAGGACTCTTTTGAACTTGACTGTGGTGCTGAGGATTGGATTGCTATTGGAGATGGTAAAGGAAATATGACAATTATTGGAGTTGCTAACGATGATTGTACTGCTACTGTGAGATTGTGCTTTACTTGGCCAGCTGAAATGGAGAGACAGCTCTTGGGTACTTATTGGTGTAAATCTCTGGGATGTAGGTATGTCTTCACAGCTGATCCTAGAGGAACATTGAAACTCTGGAGGTTGCCTGACCCTTCACAATCGGATCTTCAGAGCTCCATGAGGAGTAACAATGTATCACGTATAGCAGAGTTCATATCAAATTATGGAATGCGGATAATGTGTTTGGATGCATGCATGGAGGAAGAGGTCCTAGCATGTGGAGATGTACGTGGTAATATGGTTCTGTTCCCTTTGCTAAAGAATCTGGTGCTGGGCATATCTGCTGCACAAGAAATGAAGATACCTCCAGTAAATCATTTCAAAGGAGTTCATGGGATTTCAAGTGTCTCCAGTGTTTCTGTGACTAAGCTTGGTTATAATCAGATTGAGATATGCTCAACTGGAGCAGATGGTTGTATATGCTATCTGGAATATGATAAAGATATGCAGAATTTGCAATTTACGGGGATGAAACAAGTGAAAGAATTATCTTTGATTGAATATGTTTCTGTGGATAACAACTCCGGTGATAAATTGTCAATCAGCTATGCAGCTGGTTTTGCATCAGTGGATTTCATAGTATGGAACTTAGTTAATGAGTATAAGGTGGTGAACATTCCATGTGGTGGATGGCGGCGTCCCCATTCCTATTATCTAGGTGATATACCAGAGATGAAAAACTGCTTTGCCTTTGTCAAGGATGAAATGATACATATACATAGACACTGGATTCATAATAGAGATGGGAAGGTATACCCTCAAAGTTTGCACATGCAGTTCCATGGTAGAGAGATACATTCCTTGTGCTTTATCTCTGATGATGTGCTTGTTGGAGATAATTATAAGTGTGCCTTATTTTCTAAATCAAGTTGGATTGCGACTGGATGTGAAGATGGAACTGTGAGGTTGACTTGGTACTCTCCAGGTATTGAAAATTGGTCTACATCAAAACTGCTTGGTGAACATGTCGGAGGATCAGCGGTAAGATCAATTTGTTGTGTGTCAAAAGTATACACCATTTCATCAGATACGGGTGATGTACCTGATGGGAGGATAGAACTGAATGCTGCTGTTGAGGACAATGATAATCCAACATTACTGATATCAGTGGGTGCAAAGCGTGTCTTAACTTCTTGGATATTAAAAAATAGGAGGCTGGACAACAAAAATGACTTCCTAACTGATCATCAGTGTAATTCAGAAGGAGCTGATGATCGGTTTTTGTCAAATTTGTCCTCATCAATGACGTTCCAGTGGCTTTCCACTGATATGCCAGCCAAATATTCAATTACGCACAATACTCCCGAAAATAATGTGGAGAAAATAGTTGGTGTTGCTGAAAATGTTTCTAATACAAATAGTGATGCTAGAATGGGATCTCTGATTTCTGAGAGTGGAATGGCAAACTTGATCAGAGATAAACATGAAGATGACTGGAGATATCTTGCGGTCACTGCTTTTCTTGTTAATTGTTCTGGTTCTAGGATATCTGTCTGTTTTGTTGTTGTTGCATGTTCAGATGCTACACTTGTGTTACGAGCTTTAATTTTGCCCTTTCGCTTGTGGTTTGACGTTGCTTTACTGGTTCCTTTATTGGCACCTGTTTTATCATTGCAGCATATAATCTTTCCCGTGTCTAGGCCTCATAAAGAAAACATCCTAGTTGGAAATGTTTATATTGTGATTAGTGGGTCTACTGATGGAAGTGTTGCTTTTTGGGACCTAACTGATAGTGTTGAAGCTTTTATGCAGCGGGTTTCAGTTTGTAATGTTGAAAAGTTTTTTGATAGTCAAAAACGACCACGCACAGGGAGAGGAAGTCAGGGTGGTAGATGGTGGAGATCTTTAAGCAGAGACTTGTCAAATAAAAGACAAGACGGCAAACTGGTCACTTTGAAAGCCGAAGACAAGACCCAAAGCTTGAGCTATGCTACACAGGGGACCTCTTGTTCTCAATCTACACATTCGGCTCCCCCAGAGTTAGAAAGCAAGACTGATAATTCGTCAGTGGAAATATGTGAAATACAACCTCTATGCCTTTTGCAAAATATTCACCAATCTGGTGTCAACTGTCTCCATGTTTCAGAGATAAAGGGTGGGCAAAATACTGATAGTTGTCATGTGTACAGCATAGTTAGTGGTGGTGATGATCAAGCACTTCATCATCTCATGGTTGAATTATCACCTAAATCAATAAATTCAAGTGATGGAATTTTGAACCCAGACATCACACATTTCGTCTCTGTACCTGAATATGGAAAGGACATCAATTTACAAAGTCAGAGCAAGAATTATAAGATTAGATTCTTAAATTACGAAAAATTACCCTCTGCCCACAGCTCTTCTGTCAAAGGTGTCTGGACAGACGGATCATGGGTGTTTTCGACTGGACTTGATCAGCGGGTCAGATGCTGGCATCTTCAGCAGAGCAAACTAATTGAGCATTCATATCTAATAGTTAGTGTGCCAGAGCCAGAAACGTTATCTGCTAGGGCTTGTGGCAGGAACCGTTATCAAATTGCTGTTGCTGGAAGAGGGATGCAAATAATTGATTTTTCTGAATCTTGA 3618 0.4055 MVLKVQSPVRCLLYSMRLWGHNLEVLQIASGAIFNEIIVWKVAPQHNKSSSHQENHDHQSISSSNCCQIKDQLYEAIHVCKLIGHEGSIFRIAWSSCGSKLVSVSDDRSARVWAVAIEREHSLCHDPVALVLFGHNARVWDCCIYDNLIITVSEDCTCRIWGVDGKQLQVIKEHIGRGIWRCLYDPNSSLLITAGFDSAIKVHQPQASLPRGLEAAQGSPGRTDMFSICVPNVLDHIGFMDSKSEYVRCLRFSCQDSLYVATNHGYLYHAKLCDTGGAQWNQLVQVSNGAPIICMDLLSKDSFELDCGAEDWIAIGDGKGNMTIIGVANDDCTATVRLCFTWPAEMERQLLGTYWCKSLGCRYVFTADPRGTLKLWRLPDPSQSDLQSSMRSNNVSRIAEFISNYGMRIMCLDACMEEEVLACGDVRGNMVLFPLLKNLVLGISAAQEMKIPPVNHFKGVHGISSVSSVSVTKLGYNQIEICSTGADGCICYLEYDKDMQNLQFTGMKQVKELSLIEYVSVDNNSGDKLSISYAAGFASVDFIVWNLVNEYKVVNIPCGGWRRPHSYYLGDIPEMKNCFAFVKDEMIHIHRHWIHNRDGKVYPQSLHMQFHGREIHSLCFISDDVLVGDNYKCALFSKSSWIATGCEDGTVRLTWYSPGIENWSTSKLLGEHVGGSAVRSICCVSKVYTISSDTGDVPDGRIELNAAVEDNDNPTLLISVGAKRVLTSWILKNRRLDNKNDFLTDHQCNSEGADDRFLSNLSSSMTFQWLSTDMPAKYSITHNTPENNVEKIVGVAENVSNTNSDARMGSLISESGMANLIRDKHEDDWRYLAVTAFLVNCSGSRISVCFVVVACSDATLVLRALILPFRLWFDVALLVPLLAPVLSLQHIIFPVSRPHKENILVGNVYIVISGSTDGSVAFWDLTDSVEAFMQRVSVCNVEKFFDSQKRPRTGRGSQGGRWWRSLSRDLSNKRQDGKLVTLKAEDKTQSLSYATQGTSCSQSTHSAPPELESKTDNSSVEICEIQPLCLLQNIHQSGVNCLHVSEIKGGQNTDSCHVYSIVSGGDDQALHHLMVELSPKSINSSDGILNPDITHFVSVPEYGKDINLQSQSKNYKIRFLNYEKLPSAHSSSVKGVWTDGSWVFSTGLDQRVRCWHLQQSKLIEHSYLIVSVPEPETLSARACGRNRYQIAVAGRGMQIIDFSES 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03508 1205 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 82 113 - -
Pumo5g03508 1205 Pfam WD domain, G-beta repeat 615 653 IPR001680 GO:0005515
Pumo5g03508 1205 Pfam WD domain, G-beta repeat 81 113 IPR001680 GO:0005515
Pumo5g03508 1205 SUPERFAMILY WD40 repeat-like 28 669 IPR036322 GO:0005515
Pumo5g03508 1205 MobiDBLite consensus disorder prediction 993 1014 - -
Pumo5g03508 1205 Gene3D - 447 774 IPR015943 GO:0005515
Pumo5g03508 1205 Gene3D - 147 438 IPR015943 GO:0005515
Pumo5g03508 1205 ProSiteProfiles Trp-Asp (WD) repeats profile. 911 933 IPR001680 GO:0005515
Pumo5g03508 1205 SUPERFAMILY WD40 repeat-like 360 933 IPR036322 GO:0005515
Pumo5g03508 1205 Gene3D - 19 146 IPR015943 GO:0005515
Pumo5g03508 1205 ProSiteProfiles Trp-Asp (WD) repeats profile. 82 113 IPR001680 GO:0005515
Pumo5g03508 1205 PANTHER WD REPEAT PROTEIN 1 1204 - -
Pumo5g03508 1205 SUPERFAMILY WD40 repeat-like 910 1163 IPR036322 GO:0005515
Pumo5g03508 1205 Gene3D - 884 1172 IPR015943 GO:0005515
Pumo5g03508 1205 SMART WD40_4 75 114 IPR001680 GO:0005515
Pumo5g03508 1205 SMART WD40_4 164 204 IPR001680 GO:0005515
Pumo5g03508 1205 SMART WD40_4 885 924 IPR001680 GO:0005515
Pumo5g03508 1205 SMART WD40_4 125 162 IPR001680 GO:0005515
Pumo5g03508 1205 SMART WD40_4 602 655 IPR001680 GO:0005515
Pumo5g03508 1205 SMART WD40_4 1113 1156 IPR001680 GO:0005515
Pumo5g03508 1205 SMART WD40_4 450 494 IPR001680 GO:0005515
Pumo5g03508 1205 SMART WD40_4 1024 1074 IPR001680 GO:0005515
Pumo5g03508 1205 SMART WD40_4 335 377 IPR001680 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03508 K24737 - gmx:100780968 2311.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03508 5 84323903 84333966 Pumo5g03508 5 84323903 84333966 ECH