Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03480 ATGGGTATGGAGAGAAAGAGGAAGGTGAGCTTGTTCGATGTGGTAGACGATTCTGTGGCGAAGATGGTGAAATCCAATGGCGGCGCCAATAACAGCGTTGCCAATAATCTCATCAATCCCTGGACTGCAAGGCCTTACTCCCAAAGGTACTTCGAGATTTTGGAGAAGAGAAAGACCCTCCCCGTTTGGCACCAGAAAGAAGAGTTTTTGCACGTTCTCAAAGATAACCAGACTTTGATTCTCGTCGGTGAAACTGGTAGTGGCAAAACAACTCAGATTCCTCAGTTTGTTTTGGATGCTGTCGAATTAGAGACACCGGATAAACGTAGGAAGATGATGATAGCGTGCACTCAGCCTCGGAGAGTGGCTGCGATGTCTGTTTCGCGTCGTGTGGCTGAAGAGATGGATGTAACTATTGGGGAAGAGGTTGGTTACAGTATCAGATTTGAAGACTGCAGTAGTGCGAGGACGGTTTTGAAGTATCTTACGGATGGTATGCTCTTAAGAGAAGCAATGACGGATCCACTTTTGGAACGGTACAAGGTTATTATTCTTGATGAGGCACATGAGAGGACTTTGGCGACGGATGTGCTATTTGGCCTTCTGAAGGAAGTGCTTAAAAATAGACCTGACTTGAAGTTGGTTGTTATGAGTGCAACTCTTGAAGCTGAAAAGTTTCAGGCGTATTTTTTCGGTGCCCCTCTCATGAAAGTTCCTGGAAGGCTACATCCTGTTGAAATTTTCTATACTCAGGAACCTGAAAGGGATTACTTGGAGGCTGGCATTAGGACAGTGGTACAGATACACATGTGTGAGCCTCCAGGAGATATACTTGTATTTCTGACTGGAGAGGAAGAGATAGAAGATGCTTGCCGCAAAATAACAAAAGAAATTTCTAATCTGGGAGACCAGGTGGGCCCTGTCAAAGTGGTACCCTTGTATTCTACTCTTCCTCCTGCTATGCAGCAGAAGATTTTTGAGCCACCTCCACCTCCGCTGAAGGAGGGTGGACCTCCTGGAAGGAAGATTGTGGTATCAACAAACATAGCAGAAACTTCCTTGACAATTGATGGTATTGTTTATGTGATTGACCCCGGTTTTGCTAAGCAGAAAGTTTATAACCCTCGAGTTCGTGTGGAGTCTTTATTAGTGTCACCTATATCAAAAGCTAGTGCACATCAGAGATCAGGGCGTGCTGGAAGAACTCAACCAGGGAAATGCTTTAGACTTTACACTGAGAAAAGTTTCAATAATGATCTTCAGCCACAGACCTATCCTGAAATTTTGAGATCAAATCTTGCGAATACAGTTCTTACTTTGAAGAAACTGGGTATAGACGATTTAGTGCATTTTGATTTCATGGACCCTCCTGCTCCTGAGACCTTAATGCGTGCATTGGAAGTGTTGAATTACTTGGGTGCACTGGATGATGATGGTAACTTAACAAAACTGGGTGAGATTATGAGTGAATTTCCCTTGGACCCACAGATGTCAAAGATGCTTGTTGTCAGTCCTGAATTCAACTGTTCAAATGAGATTCTGTCAGTTTCTGCCATGCTTTCAGTACCCAATTGCTTTGTCCGGCCTAGGGAGGCACAAAAAGCTGCGGATGAAGCTAAAGCTAGGTTCGGGCACATTGATGGAGATCATCTCACGCTGTTGAATGTCTATCACGCGTACAAGCAAAATAATGAGGATCCCTCTTGGTGCTACGATAACTTTGTTAATCATAGGGCATTGAAAGCAGCTGATAATGTTAGACAACAATTAGTGCGTATCATGGCCCGGTTTAATCTGAAGCTATGCAGCACTGACTTTAATAGCCGTGACTACTATGTCAACATAAGAAAAGCTATGCTAGCTGGGTATTTCATGCAGGTAGCTCATATGGAGCGTACAGGACACTACTTGACAGTGAAAGACAACCAGGTGGTGCATTTGCATCCATCAAATTGCCTGGATCACAAGCCTGAATGGGTCATTTATAATGAATATGTGCTTACCAGTCGGAATTTTATTCGTACTGTTACAGACATACGTGGAGAATGGTTGGTTGATATAGCACCACATTACTATGATTTGTCTAATTTTCCCCAATGTGAGGCAAAGCGTGTTCTTGAGACACTTTACAAGAAGCGAGAAAAGGAAAAGGAGGAAGCCAGGAGCCGTAGATGA 2175 0.4377 MGMERKRKVSLFDVVDDSVAKMVKSNGGANNSVANNLINPWTARPYSQRYFEILEKRKTLPVWHQKEEFLHVLKDNQTLILVGETGSGKTTQIPQFVLDAVELETPDKRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQAYFFGAPLMKVPGRLHPVEIFYTQEPERDYLEAGIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKEISNLGDQVGPVKVVPLYSTLPPAMQQKIFEPPPPPLKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKAADNVRQQLVRIMARFNLKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHMERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPQCEAKRVLETLYKKREKEKEEARSRR 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03480 724 Gene3D - 10 241 IPR027417 -
Pumo5g03480 724 FunFam Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 14 241 - -
Pumo5g03480 724 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 615 691 IPR011709 -
Pumo5g03480 724 Gene3D - 242 424 IPR027417 -
Pumo5g03480 724 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 264 444 IPR001650 -
Pumo5g03480 724 Pfam DEAD/DEAH box helicase 67 224 IPR011545 GO:0003676|GO:0005524
Pumo5g03480 724 CDD SF2_C_RHA 243 411 - -
Pumo5g03480 724 Gene3D - 448 557 - -
Pumo5g03480 724 SMART ha2_5 464 554 IPR007502 GO:0004386
Pumo5g03480 724 PANTHER ATP-DEPENDENT RNA HELICASE 47 696 - -
Pumo5g03480 724 SMART helicmild6 285 403 IPR001650 -
Pumo5g03480 724 SMART ultradead3 57 248 IPR014001 -
Pumo5g03480 724 Pfam Helicase associated domain (HA2) 465 553 IPR007502 GO:0004386
Pumo5g03480 724 Coils Coil 703 723 - -
Pumo5g03480 724 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 448 556 - -
Pumo5g03480 724 Pfam Helicase conserved C-terminal domain 270 402 IPR001650 -
Pumo5g03480 724 CDD DEXHc_DHX15 48 238 IPR044756 GO:0003724|GO:0005524
Pumo5g03480 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 633 IPR027417 -
Pumo5g03480 724 FunFam Predicted protein 254 423 - -
Pumo5g03480 724 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 70 239 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03480 Pumo-Chr5 84088653 84092547 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03480 K12820 - gmx:100817506 1369.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03480 5 84088653 84092547 Pumo5g03480 5 84088653 84092547 ECH