Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03475 ATGGCTCCCCCGAACGATCCAGTGAACTCAACCTTAGGACTCAAGTCACTGGAAAAGGTTTTTGATTTATGTGACGGGAAATTCAGCGTGAGAGGCGTGCCATTACTCTCTGAGGTACCCAATAATGTCACTTTCAGTTCCTTCTCCTCAATCTGTGAACCTCGTGAAGCCCCACCTTCGATCCTTCAACGTGTCATTGCCGTGTCACACAAAGGTGGCTTCTTCGGATTCTCCCAGGTTTCACCCTCCGACAGGTTGACAAACTCCTTGGGCAGTTTCAGCGGCAGAAACTTCCTCAGCATCTTCAGGTTCAAAACATGGTGGTCAACCCAGTGGGTCGGAAATTCCGGTTCAGACTTGCAAATGGAAACCCAGTGGGTCCTCATAGAAATCCCCGAAATAAAATCCTATGTCATAATCATTCCCATAATAGAAAAAAGTTTCAGGTCCGCTCTTCACCCTGGTTCTGATGGCCATGTCATGATTTGTGCTGAGAGTGGTTCTACCCAAGTGAAAGCATCGAGTTTCGGTGCAATTGCATATGTCCAAGTGTCTGAGAACCCTTACAACTTGATGAGAGAGGCCTATAGTGCTCTCAGGGTTCACCTCGATTCGTTCAGGTTGTTGGAGGAGAAAACGGTGCCAAGAATTGTTGACAAATTCGGTTGGTGCACTTGGGATGCGTTTTACTTGACTGTGAACCCTGTTGGGGTTTGGCATGGGCTTAAGGATTTTGCTGAGGGTGGCGTGGCTCCGAGGTTTGTTATCATTGATGATGGGTGGCAGAGTGTGAATTTTGATGGCGATAACCCCAACGAGGATGCTAAGAATCTTGTTCTGGGTGGGGAACAAATGACCGCGAGGCTTCATAGGTTTGAAGAATGTGACAAGTTTAAAAAGTACCAAAAGGGGCTCCTTTTGGGTCCTGATGCTCCTTCTTTCAACCCAAAGACGGTTAAGGAGTTGATTGCGAAGGGGATTGAAGTTGAGCGTTTGGGGAAGCAACGTGACGAGGCTATTTCATATGGGGGTTCTGATTTGACCGAGATTGAGTCGAGGATTGTGGAGGTGAAAAAGGAAATTGATGATCTCTTTGGTGGGGAGGGAAAGGAGAGCAAAGAATTATGTGGAGGGTGTTGTTGCAAAGCAAGGGAGTGTGGTGGGATTAGTGCTTTCATAAGGGACTTGAGGACTGAATTCAAAGGTTTGGATGATGTTTATGTGTGGCAAGCACTTTGTGGCGCGTGGGGTGGTGTGAGGCCAGGAACCACGCACTTGAATTCCAAAATAACACCTTGCAAACTCTCCCCTGGCCTCGATGGGACCATGCAAGATCTTGCTGTGGTTAAAATAGTGGAAGGTTCCATAGGGCTTGTTCATCCTGATCAAGCTAATGACTTGTACGATTCCATGCACTCTTATCTTGCCCAATCTGGTGTTACCGGAGTCAAAGTTGACGTCATTCATAGTCTTGAATATGTGTGCGAGGAATATGGAGGCAGAGTCGAGCTTGCCAAGGCTTATTACGATGGGTTGACAAACTCCATTGTCAAGAATTTCAATGGAAGTGGAATCATCGCTAGCATGCAGCAGTGCAACGATTTTTTCTTCCTTGGAACCAAGCAAATTCCCATGGGAAGAGTTGGGGATGACTTTTGGTTCCAAGATCCCAATGGGGACCCAATGGGAGTGTTCTGGTTACAAGGGGTGCACATGATTCATTGTTCCTACAACAGCTTGTGGATGGGGCAGATGATTCAGCCCGATTGGGACATGTTCCAATCGGACCATGTTTCTGCCAAATTTCATGCGGGTTCGAGGGCTATTTGTGGTGGTCCTGTCTATTTGAGTGACAATGTTGGCTCTCATGATTTTGATCTCATTAAGAAGCTTGTCTTCCCTGATGGCACCGTGCCCAAATGCATACACTATCCCCTTCCAACAAGAGATTGCCTTTTCAGGAATCCTCTCTTTGACCAGAAAACCGTTCTCAAAATTTGGAACTTCAACAAGTATGGAGGAGTTATTGGTGCTTTCAATTGTCAAGGGGCTGGTTGGGACCCTAAGGTGCAGAAGATCAGGGGTTTCCCTGAATGCTACAAGCCAATATCTTGTACTGTGCATGTAACTGAGGTTGAATGGGACCAAAAGAAAGAAGCAGCACATATGGGAAAGGCAGAGGAATATGTTGTGTACCTCAATCAGGCTGAGGAACTGCATTTCATGACCCCAAAGTCTGAACCACTCCAATTTACTATTCAACCTTCCACTTTTGAGCTCTACAACTTTGTCCGAGTCACAAAGCTAGGTGGCAGCACCAAATTTGCACCAATTGGGCTGACAAACATGTTCAACAGTGGAGGGACAATTCAAGAATTGGAGTATGTTGAAAAGGGTGCTAAGGTTAAGGTTAAGGGTGGTGGTAGATTCCTTGCTTACTCAAGTGAATCTCCAAAGAAGTTCCAACTGAATGGTTCTGATGTTGCTTTTGAGTGGCTCCCTGATGGCAAACTCACTCTCAACCTTGCTTGGATTGAAGAGAATGGTGGGGTCTCTGATTTGGCAATTTTCTTCTAG 2577 0.4626 MAPPNDPVNSTLGLKSLEKVFDLCDGKFSVRGVPLLSEVPNNVTFSSFSSICEPREAPPSILQRVIAVSHKGGFFGFSQVSPSDRLTNSLGSFSGRNFLSIFRFKTWWSTQWVGNSGSDLQMETQWVLIEIPEIKSYVIIIPIIEKSFRSALHPGSDGHVMICAESGSTQVKASSFGAIAYVQVSENPYNLMREAYSALRVHLDSFRLLEEKTVPRIVDKFGWCTWDAFYLTVNPVGVWHGLKDFAEGGVAPRFVIIDDGWQSVNFDGDNPNEDAKNLVLGGEQMTARLHRFEECDKFKKYQKGLLLGPDAPSFNPKTVKELIAKGIEVERLGKQRDEAISYGGSDLTEIESRIVEVKKEIDDLFGGEGKESKELCGGCCCKARECGGISAFIRDLRTEFKGLDDVYVWQALCGAWGGVRPGTTHLNSKITPCKLSPGLDGTMQDLAVVKIVEGSIGLVHPDQANDLYDSMHSYLAQSGVTGVKVDVIHSLEYVCEEYGGRVELAKAYYDGLTNSIVKNFNGSGIIASMQQCNDFFFLGTKQIPMGRVGDDFWFQDPNGDPMGVFWLQGVHMIHCSYNSLWMGQMIQPDWDMFQSDHVSAKFHAGSRAICGGPVYLSDNVGSHDFDLIKKLVFPDGTVPKCIHYPLPTRDCLFRNPLFDQKTVLKIWNFNKYGGVIGAFNCQGAGWDPKVQKIRGFPECYKPISCTVHVTEVEWDQKKEAAHMGKAEEYVVYLNQAEELHFMTPKSEPLQFTIQPSTFELYNFVRVTKLGGSTKFAPIGLTNMFNSGGTIQELEYVEKGAKVKVKGGGRFLAYSSESPKKFQLNGSDVAFEWLPDGKLTLNLAWIEENGGVSDLAIFF 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03475 858 PANTHER - 21 848 IPR008811 -
Pumo5g03475 858 Pfam Raffinose synthase or seed imbibition protein Sip1 24 841 IPR008811 -
Pumo5g03475 858 SUPERFAMILY (Trans)glycosidases 388 631 IPR017853 -
Pumo5g03475 858 SUPERFAMILY (Trans)glycosidases 213 269 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03475 Pumo-Chr5 84008649 84012335 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03475 21 858 Glycoside Hydrolase AT4G01970 59.155 0.0 1049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03475 K06611 - gmx:100815922 1675.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03475 5 84008649 84012335 Pumo5g03475 5 84008649 84012335 ECH