LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo5g03469	ATGGAAGATTTGGGAGGTACCCGGTTTGATGGCCTCAGCAATGCTGTGAGGAGGAAGAGGAGTCAGACTTCCCGCAGGCCTCGACCTGATTCGCAGCATGCTTCTGAAGGTCATGAACTGTCTCCCTTGTCGTCGACGCCTTCAGAGGATGCTGGCAAGGCCTCTAGTGATGAGAATGTTGGTTACGATTCTAATTCCAAGAGAAAGGAATTCAATCTTAACCATTGTGTCTCTCAAACCTCCTCTGGTACTGGAGCTGAAGACGATAAACCCCATAAAAAGAGTAAAAAAGATGGAGGGTTCCACGCGTTTTATAATAATGAGCCTGGACGGAGCGGTTTGCATAATAAACGCTGTAGTGAAGGTGTTCTTGCTCCAGCAAATTGGAAAGGTTCTAGCAAAGTGAAGGATAGCTTGGATTCAGAGTTGAGAAATGCAGATTTGTATGGTGGAAGGAATCCTGAGAGTATGAGCTTGGCGCAGTTTGGTGGCTCTCAGGATGGATTGGGGAATGAGAACCGGGTTAAGAAGGTTAAACTCAAGGTTGGCGGGGTGACACGTACTATTCAAGCCAATTCAGCAACCAATGGTGCTTCGGGAAGTGGATCAACAATGAAGAGCTCACGTTCATCAGATGCCTCCAGACCACGCCAAAAGCAACAGAGTAATTCAGACGATAATAATTCTCCTTCTGATAAGAGGAGTGGTCTTCAAGGTGTTCCTTGGAAGGATTTCTCAAGGGGTGGTTTTAATCTTGGGAAGGAGGAATCATCGATGGGGAAGATTTCTGGAAAGAACACATCTAGTAAGCTGGGAGACAAGTCTGAACCAGTTCGTAAGAGCAAGCGAGTACCAAAGAGACGTGTACTTGATGGGGAATTCGGTGATGATGATGATGAGGATGATGAGATTCGGTACTTGGAAAAGCTGAAAACGTCAAAAGTTTCTGCAGTCTATAGAGATGAAGAAGAATTAAGCAAGAAACATCGAAAGCTATCTAGTGTCTCTAATATGGAAAATGCTGCCCCAAGGTCAGGCAAAGACGGTAAGAAAAGGTCTAGATCTGATAGAGTGTATGAGGACACAGATTATGAGGATGAAGAGGAGTCAGGGTCTGATGGTGAGCTTGAGGATAAGAAAAAGAAAAAACAGAGGAAGGAATCTGTTGATGTATTGATGGACAGTAAGAGGGAAATGACTCTTACGACTCGTCAACGGGCACTTCAATCAAGCAAAGATGCCTCTGCATCTGGTGCTAGTTTAGTTGAGTTTCCCAACGGATTACCACCTGCCCCACCTAGAAAACAAAAGGAGAAGCTTTCAGAGGTTGACCAGCAATTGAAGAAAGCTGAGGCTGCACAGAGGCGTAGAATGCAAGTTGAGAAGGCTGCCAGGGAATCTGAGGCTGAAGCTATCAGAAAAATACTTGGTCAAGACTCCAGTAGGAAAAAGCGAGAAGAGAAAATAAAGAAGCGCCAGGAAGAACTGGCACAGGAAAAGGCAGCCAATGCACGAATGCTTGCATCAAATATCATCAGATACACAATGGGTCCGACTGGAACGGTTGTGACTTTTTCTGAGGAAATGGGGCTTCCTAGCGTATTGAACTCCAAACCCGTCAGTTATCCCCCACCTCGTGAGAAGTGTGCTGGTCCATCTTGTACAAATCCTTATAAGTATCGGGATTCAAAATCAAAGCTTCCTCTTTGCAGTCTCCAATGCTACAAAGCTGTCCAGGAGAAGGTGGTGGCTGAAACTACCTGTTGA	1767	0.4544	MEDLGGTRFDGLSNAVRRKRSQTSRRPRPDSQHASEGHELSPLSSTPSEDAGKASSDENVGYDSNSKRKEFNLNHCVSQTSSGTGAEDDKPHKKSKKDGGFHAFYNNEPGRSGLHNKRCSEGVLAPANWKGSSKVKDSLDSELRNADLYGGRNPESMSLAQFGGSQDGLGNENRVKKVKLKVGGVTRTIQANSATNGASGSGSTMKSSRSSDASRPRQKQQSNSDDNNSPSDKRSGLQGVPWKDFSRGGFNLGKEESSMGKISGKNTSSKLGDKSEPVRKSKRVPKRRVLDGEFGDDDDEDDEIRYLEKLKTSKVSAVYRDEEELSKKHRKLSSVSNMENAAPRSGKDGKKRSRSDRVYEDTDYEDEEESGSDGELEDKKKKKQRKESVDVLMDSKREMTLTTRQRALQSSKDASASGASLVEFPNGLPPAPPRKQKEKLSEVDQQLKKAEAAQRRRMQVEKAARESEAEAIRKILGQDSSRKKREEKIKKRQEELAQEKAANARMLASNIIRYTMGPTGTVVTFSEEMGLPSVLNSKPVSYPPPREKCAGPSCTNPYKYRDSKSKLPLCSLQCYKAVQEKVVAETTC	588

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo5g03469	588	SMART	PAPA_1_2	444	529	IPR006880	GO:0031011
	Pumo5g03469	588	Pfam	HIT zinc finger	545	576	IPR007529	-
	Pumo5g03469	588	MobiDBLite	consensus disorder prediction	1	118	-	-
	Pumo5g03469	588	MobiDBLite	consensus disorder prediction	402	417	-	-
	Pumo5g03469	588	MobiDBLite	consensus disorder prediction	186	235	-	-
	Pumo5g03469	588	Coils	Coil	482	502	-	-
	Pumo5g03469	588	MobiDBLite	consensus disorder prediction	146	500	-	-
	Pumo5g03469	588	MobiDBLite	consensus disorder prediction	344	360	-	-
	Pumo5g03469	588	MobiDBLite	consensus disorder prediction	272	293	-	-
	Pumo5g03469	588	MobiDBLite	consensus disorder prediction	435	499	-	-
	Pumo5g03469	588	MobiDBLite	consensus disorder prediction	374	401	-	-
	Pumo5g03469	588	Pfam	PAPA-1-like conserved region	445	529	IPR006880	GO:0031011
	Pumo5g03469	588	MobiDBLite	consensus disorder prediction	71	85	-	-
	Pumo5g03469	588	MobiDBLite	consensus disorder prediction	304	334	-	-
	Pumo5g03469	588	MobiDBLite	consensus disorder prediction	86	101	-	-
	Pumo5g03469	588	MobiDBLite	consensus disorder prediction	37	61	-	-
	Pumo5g03469	588	Coils	Coil	443	470	-	-
	Pumo5g03469	588	PANTHER	INO80 COMPLEX SUBUNIT B	7	582	IPR029523	GO:0006338\|GO:0031011

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo5g03469	Pumo-Chr5	83932762	83937082	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo5g03469	-		-	gmx:100814323	988.023

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo5g03469	5	83932762	83937082	Pumo5g03469	5	83932762	83937082	ECH