Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03453 ATGGCTCCTTCCCGCCGCAACACCAACGGTCGATCACCGCTCGTCAATCAACAGCGTCAAATCACTTCCTTCTTCAACAAATCCGCTTCCCCTTCTCCCTCTCCCTCTCCCTCTCCCACCCTCTCCAAAACCAACCATAAACTAAACCCTAACCCTAACCCTAGCCCTAGTCCCATCCCCGCTACTCCTTCACCTCTCAATCCCAAACCGCCCAAGCCCCTTCTTGTCATTGGCGCTTCCACTTCTCCACCCTTCGCCTCGCCTTCTCTCTACGGCCAAGAGGTCGTTGGCCGAAGGATCAAGGTTTATTGGCCCTTGGACAAAGCCTGGTACGAAGGTTCCGTCAAATCCTTCGATAGTCTCACCTCTAAGCACGTGGTTTGTTACGACGATGACGAAGAGGAATCCCTCGACCTCTCCAAGGAGAAGATCGAGTGGCTCCAGGAATCCTCTTCGAAGAAACTTAAACGCCTGCGTCGTGGCGTCCCGGCTGTTAGGAAGATGGTGATCGACGACGACGACGAAGTCGAAGAAGAAGAAAATCACAAAGGAGAAGATAATGATGATGATGATTCCAATGACGAAGATTGGGGGAAGAATGCTGCTGCATTGGAGGATGCCGGGGAAGCTGAAGAAGATACGGATTTAGAGGATGAAAACGACGTAGCAGAGAAGGCTAAAGGGAAAAAGGTTGAGCCTAAAAAGCGGAAACTAACTGGAACGGAGAAACAAGAGCCTGCAAAAAAGAGCAAGAGTGGAGTGGAAGTTGGTAAGGGAGCTTTCAAGCTCTCAGTATTGGAGCCTACGACTAATTTGGAGATTAAAGAGACATCTAAGGGTACCGACAATGTTGTGATTACTGAGACCTCTGAAAGATTTGCATTGCGTGATGCTCAGAAATTGCGCTTCCTGAAAGAAGATCGCAGGGATGCCAAGCGAAGGCGACCAGGGGATGAAAATTATGATTCAAAAACTCTCTATTTGCCTCCTGATTTCTTAAGGAGTTTGTCAGATGGTCAGAAACAATGGTGGGAGTTCAAATCAAAGCATTTGGACAAAGTTTTGTTTTTCAAGATGGGTAAATTTTATGAGCTTTTTGAGATAGATGCACATGTAGGTGTGAAAGAGCTTGACTTGCAGTATATGAAGGGAGACCAACCTCATTGTGGATTTCCAGAGAGGAATTTCTCGATGAACGTGGAGAAACTGGCTAGGAAGGGTTATCGAGTTCTTGTTGTAGAGCAGACTGAAACACCTGAACAGCTGGAGCTTCGTCGCAAGGAGAAGGGCTCTAAAGATAAGGTTGTAAGGCGTGAGATATGTGCAGTGGTTACAAAAGGTACATTAACAGATGGGGAGTTGCTGTCAGCAAACCCTGAAGCTGCATATTTAATGGCCCTGACCGAGCATCACGAAAATCACCCAAATGAAATTTCAGAGCATATCTATGGTGTTTGTATTGTTGATGTTGCCACAAGTAGAGTCATTCTTGGACAGTTTAAGGATGACTTGGAGTGCAGTGCCTTGTGCTGTATCTTATCTGAGATCAGGCCTGTTGAAATTGTGAAACCTGCTAAACAACTCAGTGCTGAAACGGAGAGAGTACTGTTGAAGCATACCAGAAATCCTTTAGTGAATGAATTAGTTCCAATTGTGGAATTCTGGGATGCTGACAAAACTCTGGATCAATTAAAGAGAATTTATGGGAACACTAATGATGGTGTTAAAGATAACGAGTTAGATTGCCTGCCAGATGTTTTATTGGAGCTGGTGAAAACAGGTGATGACAGTAGAAGTGCACTTTCAGCACTAGGTGGTGCTCTCTATTATCTGAGACAGGCTTTTCTAGATGAGAGATTGCTTAGATTTGCAAAGTTTGAGTTACTTCCATGTTCTGGTTTTGGTGATCTTGCATCAAAACCCTACATGGTTCTTGATGCAGCTGCTCTTGAGAATCTTGAGATTTTTGAGAATAGCAGGAATGGAGATTCTTCAGGCACGCTCTATGCCCAACTAAACCAATGTGTTACTGCTTTTGGAAAGAGATTGCTAAAGACTTGGCTTGCAAGACCATTATGTCATGTGGAGTCAATTAAGGAACGCCAGGAAGCTGTTGCAGGTTTGAAGGGAGTTAATCTACCTTATGCACTAGAATATCGAAAAGCATTATCCAAGCTACCTGACATGGAGCGGTTGCTTGCACGCATCTTTTCCTCTAGTGAAGCTAGTGGAAGGAATGCTAATAAAGTGGTTCTGTATGAGGATGCATCTAAGAAGCAACTGCAAGAGTTTATTTTAGCTCTGCGTGGTTGTGAACAGATGGCACAAGCATGCTCTTCACTTGATGTCATTTTGAATCATGTCAAATCTAGACAACTTCATCATCTGTTAACACCGGGTAAAGGTCTTCCTGATGTTTGTGTGGATCTTAATCATTTCAAGGATGCCTTTGATTGGGTGGAAGCCAATAACTCTGGGCGTATAATACCTCATGAAGGAGTTGACACAGAGTATGACTCAGCCTGTAAGGCGGTTAAAGAGATTGAGTCCAGTTTATTGAAGCATCTCAAGGAACAAAGGAAACTACTTGGAGGCACATCAATTACTTATGTCAATGTTGGAAAGGATACATACCTATTGGAAGTGCCAGAAAATTTGTGTAAGAATATTCCTCGAGATTATGAACTGCGTTCATCCAGAAAAGTAAGAAGACAAACAATGCACTGA 2727 0.4411 MAPSRRNTNGRSPLVNQQRQITSFFNKSASPSPSPSPSPTLSKTNHKLNPNPNPSPSPIPATPSPLNPKPPKPLLVIGASTSPPFASPSLYGQEVVGRRIKVYWPLDKAWYEGSVKSFDSLTSKHVVCYDDDEEESLDLSKEKIEWLQESSSKKLKRLRRGVPAVRKMVIDDDDEVEEEENHKGEDNDDDDSNDEDWGKNAAALEDAGEAEEDTDLEDENDVAEKAKGKKVEPKKRKLTGTEKQEPAKKSKSGVEVGKGAFKLSVLEPTTNLEIKETSKGTDNVVITETSERFALRDAQKLRFLKEDRRDAKRRRPGDENYDSKTLYLPPDFLRSLSDGQKQWWEFKSKHLDKVLFFKMGKFYELFEIDAHVGVKELDLQYMKGDQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVRREICAVVTKGTLTDGELLSANPEAAYLMALTEHHENHPNEISEHIYGVCIVDVATSRVILGQFKDDLECSALCCILSEIRPVEIVKPAKQLSAETERVLLKHTRNPLVNELVPIVEFWDADKTLDQLKRIYGNTNDGVKDNELDCLPDVLLELVKTGDDSRSALSALGGALYYLRQAFLDERLLRFAKFELLPCSGFGDLASKPYMVLDAAALENLEIFENSRNGDSSGTLYAQLNQCVTAFGKRLLKTWLARPLCHVESIKERQEAVAGLKGVNLPYALEYRKALSKLPDMERLLARIFSSSEASGRNANKVVLYEDASKKQLQEFILALRGCEQMAQACSSLDVILNHVKSRQLHHLLTPGKGLPDVCVDLNHFKDAFDWVEANNSGRIIPHEGVDTEYDSACKAVKEIESSLLKHLKEQRKLLGGTSITYVNVGKDTYLLEVPENLCKNIPRDYELRSSRKVRRQTMH 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03453 908 Gene3D - 643 796 - -
Pumo5g03453 908 MobiDBLite consensus disorder prediction 220 252 - -
Pumo5g03453 908 Gene3D - 93 146 - -
Pumo5g03453 908 Gene3D DNA repair protein MutS, domain I 296 456 IPR016151 GO:0005524|GO:0006298|GO:0030983
Pumo5g03453 908 MobiDBLite consensus disorder prediction 166 254 - -
Pumo5g03453 908 MobiDBLite consensus disorder prediction 172 195 - -
Pumo5g03453 908 CDD Tudor_Agenet_AtEML-like 96 146 - -
Pumo5g03453 908 SMART TUDOR_7 92 150 IPR002999 -
Pumo5g03453 908 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 340 898 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Pumo5g03453 908 PIRSF Msh6 2 908 IPR017261 GO:0006298|GO:0030983
Pumo5g03453 908 FunFam DNA mismatch repair protein 809 906 - -
Pumo5g03453 908 SUPERFAMILY Tudor/PWWP/MBT 95 135 - -
Pumo5g03453 908 SUPERFAMILY DNA repair protein MutS, domain I 325 448 IPR016151 GO:0005524|GO:0006298|GO:0030983
Pumo5g03453 908 FunFam DNA mismatch repair protein 88 142 - -
Pumo5g03453 908 Gene3D - 809 903 - -
Pumo5g03453 908 Pfam MutS domain II 463 614 IPR007860 GO:0005524|GO:0006298|GO:0030983
Pumo5g03453 908 Pfam MutS domain III 649 781 IPR007696 GO:0005524|GO:0006298|GO:0030983
Pumo5g03453 908 Gene3D MutS, connector domain 461 637 IPR036678 GO:0005524|GO:0006298|GO:0030983
Pumo5g03453 908 MobiDBLite consensus disorder prediction 1 31 - -
Pumo5g03453 908 MobiDBLite consensus disorder prediction 51 72 - -
Pumo5g03453 908 Pfam MutS family domain IV 833 901 IPR007861 GO:0005524|GO:0006298|GO:0030983
Pumo5g03453 908 SUPERFAMILY DNA repair protein MutS, domain II 458 658 IPR036678 GO:0005524|GO:0006298|GO:0030983
Pumo5g03453 908 FunFam DNA mismatch repair protein 294 457 - -
Pumo5g03453 908 SUPERFAMILY DNA repair protein MutS, domain III 646 901 IPR036187 -
Pumo5g03453 908 Pfam MutS domain I 340 452 IPR007695 GO:0005524|GO:0006298|GO:0030983
Pumo5g03453 908 SMART DNAend 663 905 IPR007696 GO:0005524|GO:0006298|GO:0030983
Pumo5g03453 908 MobiDBLite consensus disorder prediction 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03453 Pumo-Chr5 83803281 83808516 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03453 K08737 - gmx:100811104 1513.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03453 5 83803281 83808516 Pumo5g03453 5 83803281 83808516 ECH