Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03434 ATGGTGAAAACGGCGTCGTCCCCTTCTTCCTCTCCGGTCACCATAACGGTGTCCTCCGGAGGACGACGCCGAAGCATGGGACTAACCAGTCCCATTCCACGCGCCTCCGTCTCCACCAACAACCCCACTTCCCCTCTCAGAGCCTCCGGCGGCGGCGGAAGGCGGCTCTCCGGCGGCGGCGCGTCCAAAGACGGCGGCATCGAAGAAACGAACTCGGAATACGTGACATACACCGTCCACATCCCTCCGACGCCGGACCGCAAGCCCCTGACAGCCTCGGAGGACGGAAAGAGCAGCACGAGCTTCATCTCCGGCACGATCTTCACCGGAGGGTACAACTCGGTGACGCGCGGCCACGTCATCGAGTGCTCCATGGAGAGCGACACGCAACCGAAAACGTTGTCGGTTTGCGGAATGAAGGGTTGCGACGAGGAAGCGATAAAGGGGAGGTTGTGTGGTCCGTGCGAGTGCGGGTTCAAGATTTGCAGGGAGTGTTACTTGGAGTGTGGTGGGAACAACGGTGGAGGAAAGTGTCCTGGGTGCAAAGAGCCTTATAAGTATGTGAGTGATGATGAAGATGATGAGGAAGAGGAGGAGGGTTCTGAGGGTGAGGATCAGCCTCTGCCTTTGCCTTCCATGGCGAAGTTGGATAAGAGGCTTTCTCTTGTGAAATCCTTCAAGGCGCAGAATCATCCTCCTGACTTTGACCACACCAGATGGCTCTTTGAGACTAAGGGGACCTATGGCTATGGAAACGCTGTGTGGCCTAAAGATGGGTACGGTGCTAACGGGTTTGAACCCCCTCCGGAGTTTGGAGAGAAAGCGAGGAGACCTTTGACAAGGAAGGTTGGAGTTTCAGCTGCTATTCTCAGTCCTTATAGGTTGCTTATTCTGCTGCGTCTTGCTGCCTTGGGTTTATTTCTTACGTGGAGGGTTAGACACCCGAACCATGAAGCGATTTGGCTATGGGCGATGTCCATAACTTGCGAGCTATGGTTTGCATTTTCGTGGCTTCTTGATCAGCTTCCTAAGCTCTGTCCTGTGAACAGAGTCACTGACCTGTCTGTTCTGAAAGAGAGGTTTGAGTCTCCAAACCTGCGAAACCCGAAAGGAAGGTCTGATCTTCCAGGAATTGACGTGTTTGTTTCCACAGCAGACCCAGAAAAGGAGCCTCCTCTTGTAACCGCCAACACCATTCTCTCGATCCTTGCAGTTGATTATCCAGTGGAGAAGGTTGCATGTTACTTGTCTGATGATGGTGGAGCTTTGTTGACTTTTGAAGCTCTTGCTGAGACCGCTAGCTTTGCTAGAATTTGGGTTCCTTTCTGTCGGAAGCACCAAATAGAGCCCCGAAATCCTGAAGCTTATTTTGGGCAGAAGCGTGATTTTCTCAAGAATAAGGTCCGGTTGGACTTTGTGAGAGAGAGGAGGAGGGTGAAGAGGGAATATGATGAGTTCAAAGTGAGGATAAACTCCTTGCCTGAATCCATAAGGAGAAGATCCGATGCTTACAATGCTCATGAGGAGCTACGAGCCAAGAAGAAACAGATGGAAGCAGGTTCCAATGTCTCTGAACCTATTAAGGTTCCTAAAGCTACGTGGATGTCCGATGGTTCTCATTGGCCAGGAACTTGGGCATCCGCAGAACAAGACCACTCAAGAGGGGACCATGCTGGTATTATTCAGGCAATGTTAGCTCCACCAAATGCAGAACCAGAATTTGGTGCAGAAGTTGATGGGGAGAACTTGATTGACACAACAGATGTTGATATTAGGTTGCCCATGCTTGTTTACGTGTCTCGTGAGAAGAGGCCAGGATATGATCACAACAAGAAAGCAGGAGCCATGAATGCTCTTGTTCGCACCAGTGCCATCATGTCCAATGGACCATTCATTCTGAATCTTGACTGTGATCATTACATCTACAACTCCTTGGCTATGAGGGAAGGTATGTGCTTTATGCTTGACAGGGGTGGTGATAGGATATGCTACGTTCAGTTCCCTCAAAGGTTTGAGGGCATTGACCCCAGTGACCGATATGCAAACCACAACACAGTGTTCTTTGATGTGAGCATGAGAGCTCTTGATGGCTTACAAGGCCCCATGTACGTGGGAACAGGCTGCGTATTCAGAAGAACAGCTCTCTATGGATTTAGTCCTCCTAGAGCCACAGAACATCATGGTTGGTTTGGCAGGAGGAAAATTAAGCTGTTCCTGAGAAAGCCAAAGGTTTCAAAAAAGGAAGAGGATGAAGTTTCTGTGCCAATAAATGGTGATCACAATGATGATGATGCAGACATAGAGTCCTTGCTTCTTCCCAAAAGGTTTGGGAACTCTACTTCTCTTGCTGCATCCATTCCTGTGGCGGAATACCAGGGAAGGTTGCTTCAAGATTTGCAAGGAAAGGGAACACAAGGAAGGCCAGCAGGTTCTCTTGCAGTGCCTCGTGAGCCATTGGATGCAGCCACTGTTGCTGAGGCCATAAGTGTGATATCTTGTTTCTATGAGGATAAAACTGAATGGGGAAAACGAGTGGGGTGGATATATGGTTCAGTTACAGAAGATGTGGTCACTGGTTACAGAATGCACAATAGAGGGTGGAGATCAGTGTACTGCGTGACCAAAAGGGATGCTTTTAGAGGAACAGCTCCAATCAACTTGACAGACAGGCTCCACCAAGTGCTTCGATGGGCAACAGGTTCTGTTGAGATTTTCTTCTCAAGGAACAATGCATTATTGGCAAGTCCTAGAATGAAGTTCCTACAGAGGGTGGCATATTTCAATGTAGGAATGTACCCTTTCACTTCAATGTTTTTGATCATCTACTGCTTTCTACCTGCAGTGTCCCTATTTTCGGGGCAGTTTATAGTTCAATCCCTCAGTGCAACTTTCCTAGTGTTCTTGCTGGGCATTACAATCACACTGTGCTTGCTTGCACTGCTCGAGATCAAGTGGTCAGGAATCACTCTACATGATTGGTGGCGAAATGAACAGTTCTGGTTGATTGGTGGAACAAGTGCACACCCTGCTGCTGTTTTACAAGGGTTGTTGAAGGTCATAGCAGGAGTGGACATATCATTCACTTTGACCTCAAAGTCAGCCACCCCAGAAGATGGAGATGATGAGTTTGCTGATCTTTATGTGGTGAAGTGGAGCTTTCTAATGGTCCCTCCAATTACAATCATGATGGTGAACTCCATTGCTATTGCTGTAGGGGTAGCCAGGACTTTGTACAGTCCCTTTCCACAATGGAGCAGACTAGTAGGAGGGGTGTTTTTCAGCTTCTGGGTGTTGTGCCATCTTTACCCCTTTGCGAAGGGCCTCATGGGAAGGAGAGGGAAGGTTCCTACCATCATCTATGTTTGGTCTGGATTGCTCTCCATTATTATCTCATTGCTTTGGGTGTACATAAACCCTCCTGCAGGAAGAACACAAGATTACATGAATTTCCAATTCCCTTGA 3462 0.487 MVKTASSPSSSPVTITVSSGGRRRSMGLTSPIPRASVSTNNPTSPLRASGGGGRRLSGGGASKDGGIEETNSEYVTYTVHIPPTPDRKPLTASEDGKSSTSFISGTIFTGGYNSVTRGHVIECSMESDTQPKTLSVCGMKGCDEEAIKGRLCGPCECGFKICRECYLECGGNNGGGKCPGCKEPYKYVSDDEDDEEEEEGSEGEDQPLPLPSMAKLDKRLSLVKSFKAQNHPPDFDHTRWLFETKGTYGYGNAVWPKDGYGANGFEPPPEFGEKARRPLTRKVGVSAAILSPYRLLILLRLAALGLFLTWRVRHPNHEAIWLWAMSITCELWFAFSWLLDQLPKLCPVNRVTDLSVLKERFESPNLRNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKVACYLSDDGGALLTFEALAETASFARIWVPFCRKHQIEPRNPEAYFGQKRDFLKNKVRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKKKQMEAGSNVSEPIKVPKATWMSDGSHWPGTWASAEQDHSRGDHAGIIQAMLAPPNAEPEFGAEVDGENLIDTTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLAMREGMCFMLDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVSMRALDGLQGPMYVGTGCVFRRTALYGFSPPRATEHHGWFGRRKIKLFLRKPKVSKKEEDEVSVPINGDHNDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGTQGRPAGSLAVPREPLDAATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPRMKFLQRVAYFNVGMYPFTSMFLIIYCFLPAVSLFSGQFIVQSLSATFLVFLLGITITLCLLALLEIKWSGITLHDWWRNEQFWLIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDDEFADLYVVKWSFLMVPPITIMMVNSIAIAVGVARTLYSPFPQWSRLVGGVFFSFWVLCHLYPFAKGLMGRRGKVPTIIYVWSGLLSIIISLLWVYINPPAGRTQDYMNFQFP 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03434 1153 FunFam cellulose synthase-like protein D3 583 720 - -
Pumo5g03434 1153 MobiDBLite consensus disorder prediction 189 211 - -
Pumo5g03434 1153 MobiDBLite consensus disorder prediction 1 47 - -
Pumo5g03434 1153 SUPERFAMILY RING/U-box 148 187 - -
Pumo5g03434 1153 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 585 730 IPR029044 -
Pumo5g03434 1153 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 277 1123 - -
Pumo5g03434 1153 SUPERFAMILY Nucleotide-diphospho-sugar transferases 393 946 IPR029044 -
Pumo5g03434 1153 Pfam Cellulose synthase 378 1145 IPR005150 GO:0016020|GO:0016760|GO:0030244
Pumo5g03434 1153 MobiDBLite consensus disorder prediction 1 99 - -
Pumo5g03434 1153 MobiDBLite consensus disorder prediction 189 204 - -
Pumo5g03434 1153 Pfam RING/Ubox like zinc-binding domain 141 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03434 Pumo-Chr5 83524442 83529133 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03434 34 1153 Glycosyltransferase AT3G03050 66.609 0.0 1548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03434 K00770 - gmx:100804687 2200.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03434 5 83524442 83529133 Pumo5g03434 5 83524442 83529133 ECH