Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03424 ATGATGGAGTCCTGTGATTGTATAGATACACAATATCCGCCAGATGAACTTCTTGTAAAGTATCAGTATATCTCGGATGTGCTAATTGCTCTTGCGTATTTTTCGATTCCGGTGGAGCTCATCTATTTTGTTCAGAAGTCTGCTTTCTTTCCATATAGATGGGTGCTTATGCAGTTTGGTGCTTTTATTGTTCTCTGTGGGGCAACTCACTTCATAAACTTGTGGACATTCTCCCCGCACTCTAAAGCTGTTGCTGTTGTCATGACGATTGCCAAAGTGTCATGTGCTATTGTGTCTTGTGCGACGGCTCTGATGCTTGTACACATTATTCCTGATCTCTTGAGTGTCAAGACGCGCGAATTGTTCCTTAAGAACAAGGCTGAAGAGCTTGACAGAGAGATGGGACTCATTCTTACTCAGGAAGAGACCGGAAGGCATGTTAGAATGTTGACTCATGAAATTAGGAGCACACTGGACAGACATACTATTTTAAAGACTACCCTTGTGGAGCTGGGGAGGACTTTAGGCTTGGAGGAATGTGCATTATGGATGCCTTCCAGAAGTGGTCTGAATCTGCAACTTTCTCATACTTTAACCTACCATGTACAGGTTGGGTCTACAGTGCAAACAAACAATCCTATTGTCAATGAAGTTTTCAATAGCCCTCGAGCTATGCGGATACCGCCCACCTGTCCACTGGCCAGGATCAGACCTCTCGTGGGAAGATATGTGCCGCCTGAAGTTGTTGCTGTTCGGGTGCCACTTCTAAATTTGTCAAATTTTCAAATTAATGATTGGCCCGATATTTCAGCAAAAAGCTATGCAATCATGGTTCTCATCCTCCCTACTGATAGTGTTAGAAAATGGCGAGACCATGAGTTGGAACTTGTTGATGTGGTTGCAGATCAGGTAGCAGTTGCCCTTTCACATGCTGCTATTTTGGAGGAGTCTATGCGAGCCCGTGATCAACTCATGGAGCAGAATGTTGCTTTAGATTTAGCCCGGCGAGAAGCAGAGATGGCAATTCATGCTCGCAATGATTTTCTTGCTGTCATGAATCATGAAATGAGGACACCAATGCATGCAATTATAGCATTGTCATCACTTCTCTTGGAGACTGAACTGACTCCGGAGCAGAGGGTTATGATAGAGACAGTGTTGAAGAGTAGTAATGTTTTGGCGACACTCATTAATGATGTTTTAGATCTTTCTCGACTTGAAGATGGTAGCCTCGAATTAGAAATGGGAAAATTCAACCTTCATGGTGTATTGGGAGAGATCGTTGAACTGATAAAACCAATAGCATCCGTGAAAAAGTTACCTATTACCTTAATTCTGTCTCCTGATCTGCCTACTCATGCCATTGGTGATGAAAAGCGACTTACACAAACTCTTTTGAATGTTGTGGGTAATGCTGTCAAATTCACTAAGGAAGGCTATGTTTCTATAAGAGTATCGGTTGCAAAACCAGAATCTTTACAGGATTGGCGACCTCCAGAGTTTTATCCAGCAGCATCTAGTGATGGCCATTTCTACATACGAGTCCAGGTTAAAGACTCTGGATGTGGGATTCCCCCACAAGATATTCCGCATCTCTTTACCAAGTTTGCCCAGTCTCGGAGTGGACCGGCTCGACCTAGCAGTGGTGCAGGTCTTGGACTTGCCATTTGTAAAAGATTTGTAAACCTCATGGGAGGCCACATATGGATTGAGAGTGAGGGCCTTGACAAAGGAAGCACAGCCACATTTATTGTCAAACTTGGGATTTGTGGCAATCCAGATCCATCGGATCATCAAGCTACAAACAGAAGCCAAGCATATAGTGGAAGTGGTGGCCTCGCTAGATTTAAACCCTTCATCAAAGATGAAGACGACACTGGTTTTTCTACTCGACGCAATCAAAGAAGTTTCTAA 1914 0.4357 MMESCDCIDTQYPPDELLVKYQYISDVLIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGAFIVLCGATHFINLWTFSPHSKAVAVVMTIAKVSCAIVSCATALMLVHIIPDLLSVKTRELFLKNKAEELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRSGLNLQLSHTLTYHVQVGSTVQTNNPIVNEVFNSPRAMRIPPTCPLARIRPLVGRYVPPEVVAVRVPLLNLSNFQINDWPDISAKSYAIMVLILPTDSVRKWRDHELELVDVVADQVAVALSHAAILEESMRARDQLMEQNVALDLARREAEMAIHARNDFLAVMNHEMRTPMHAIIALSSLLLETELTPEQRVMIETVLKSSNVLATLINDVLDLSRLEDGSLELEMGKFNLHGVLGEIVELIKPIASVKKLPITLILSPDLPTHAIGDEKRLTQTLLNVVGNAVKFTKEGYVSIRVSVAKPESLQDWRPPEFYPAASSDGHFYIRVQVKDSGCGIPPQDIPHLFTKFAQSRSGPARPSSGAGLGLAICKRFVNLMGGHIWIESEGLDKGSTATFIVKLGICGNPDPSDHQATNRSQAYSGSGGLARFKPFIKDEDDTGFSTRRNQRSF 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03424 637 Pfam His Kinase A (phospho-acceptor) domain 345 409 IPR003661 GO:0000155|GO:0007165
Pumo5g03424 637 Pfam GAF domain 159 308 IPR003018 GO:0005515
Pumo5g03424 637 PRINTS Bacterial sensor protein C-terminal signature 548 566 IPR004358 GO:0016310|GO:0016772
Pumo5g03424 637 PRINTS Bacterial sensor protein C-terminal signature 531 541 IPR004358 GO:0016310|GO:0016772
Pumo5g03424 637 PRINTS Bacterial sensor protein C-terminal signature 513 527 IPR004358 GO:0016310|GO:0016772
Pumo5g03424 637 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 3 625 - -
Pumo5g03424 637 SMART gaf_1 159 318 IPR003018 GO:0005515
Pumo5g03424 637 Gene3D - 310 408 - -
Pumo5g03424 637 Gene3D - 139 309 IPR029016 -
Pumo5g03424 637 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 456 587 IPR003594 -
Pumo5g03424 637 SUPERFAMILY GAF domain-like 159 320 - -
Pumo5g03424 637 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 398 587 IPR036890 -
Pumo5g03424 637 SMART HKATPase_4 456 589 IPR003594 -
Pumo5g03424 637 FunFam Ethylene receptor 1 311 407 - -
Pumo5g03424 637 ProSiteProfiles Histidine kinase domain profile. 351 589 IPR005467 -
Pumo5g03424 637 CDD HisKA 342 405 IPR003661 GO:0000155|GO:0007165
Pumo5g03424 637 FunFam Ethylene response sensor 137 309 - -
Pumo5g03424 637 CDD HATPase_EvgS-ArcB-TorS-like 461 587 - -
Pumo5g03424 637 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 330 410 IPR036097 GO:0000155|GO:0007165
Pumo5g03424 637 Gene3D - 409 590 IPR036890 -
Pumo5g03424 637 FunFam Ethylene receptor 1 409 592 - -
Pumo5g03424 637 SMART HisKA_10 344 409 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03424 Pumo-Chr5 83409712 83414719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03424 2 596 Miscellaneous Gene Families AT2G40940 77.983 0.0 936
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03424 K14509 - gmx:100802569 1214.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03424 5 83409712 83414719 Pumo5g03424 5 83409712 83414719 ECH