Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03382 ATGGCTGTGGTTGCAGTGCAGCAATTCCTGCGCTTCTCAGAATCAAATTGGAGGAATATAACAAGGCCATGCATTCCCCCTCACAGTTCAATTCTTCTACGTTCACGCAAAAGGATTCAATATTCTCTGATTTCATGCTCTTCATCGCAGACCCCAGAAGCTGATACTCAAACTGCTGAATCTTGCGTCAATTTGGGTCTTGAGCTCTTCTCCAAAGGACGGGTTAAAGATGCTTTAACCCAGTTTGAAACAGCACTTTCCTTGAACCCTAATCCAGTGGAGGCCCAAGCGGCGTACTACAACAAAGCTTGCTGCCATGCATACAGGGGAGAAGGAAAGAAAGCAGCTGATTGTCTCCGCACTGCTTTGAGGGAATACAATCTAAAATTTGGTACAATTCTCAACGATCCCGACTTGGCCTCCTTCAGAGCTTTGCCTGAATTCAAAGAACTACAAGAAGAGGCTAGGCTGGGTGGGGAAGATATCGGCTACGGTTTTCGGCGAGATCTAAAACTTATTAGTGAAGTCCAAGCACCATTTCGTGGGGTTAGGAGATTCTTTTATGTAGCATTTACAGCAGCTGCTGGAATATCATTGTTTTTTACTGTGCCCAGGCTATTTCGTGCAATCAATGGTGGTGATGGTGCTCCTGATCTCTTGGCAACTGCTGGGAATGCTGCCATTAATATTGGAGGTATTGTTGTTCTTGTGGCATTATTCTTTTGGGACAATAAAAAAGAGGAGGAACAACTTGCACAAATATCTCGAGATGAGACACTATCAAGGTTGCCTTTGCGCCTTTCAACTAATCGCGTTGTTGAACTTGTGCAGCTACGGGATACAGTTCGACCAGTCAGTATCTGTGTTCTTTTACCACTGCTCTGCTCTCTCTCTCTACCACATTATGTTGGACTTTTTCTTTTTGCTTTACTTTTCTATCCTTTTTTCTCCTTTTTCTTGTTTATTTTTGCTCTGTCTCTCTTGTTTATTTTTGTCTCCTTTTTCTTCTGTTTTTTTATTTTTTTATTTTTTTTATATATATACATACATAGATACATGCTCACTCACAAGGTAATTAATTTTGAACTTAAAAATTGTTGA 1101 0.4105 MAVVAVQQFLRFSESNWRNITRPCIPPHSSILLRSRKRIQYSLISCSSSQTPEADTQTAESCVNLGLELFSKGRVKDALTQFETALSLNPNPVEAQAAYYNKACCHAYRGEGKKAADCLRTALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVAFTAAAGISLFFTVPRLFRAINGGDGAPDLLATAGNAAINIGGIVVLVALFFWDNKKEEEQLAQISRDETLSRLPLRLSTNRVVELVQLRDTVRPVSICVLLPLLCSLSLPHYVGLFLFALLFYPFFSFFLFIFALSLLFIFVSFFFCFFIFLFFLYIYIHRYMLTHKVINFELKNC 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03382 366 Pfam Tetratricopeptide repeat 59 91 IPR013105 -
Pumo5g03382 366 Gene3D Tetratricopeptide repeat domain 46 144 IPR011990 GO:0005515
Pumo5g03382 366 ProSiteProfiles TPR repeat profile. 59 92 IPR019734 GO:0005515
Pumo5g03382 366 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 45 288 - -
Pumo5g03382 366 FunFam Protein LOW PSII ACCUMULATION 1, chloroplastic 46 152 - -
Pumo5g03382 366 Pfam Low psii accumulation1 / Rep27 167 244 IPR021883 -
Pumo5g03382 366 SUPERFAMILY TPR-like 53 125 IPR011990 GO:0005515
Pumo5g03382 366 SMART tpr_5 96 129 IPR019734 GO:0005515
Pumo5g03382 366 SMART tpr_5 59 92 IPR019734 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03382 - - gmx:100784188 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03382 5 82910677 82913206 Pumo5g03382 5 82910677 82913206 ECH