LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo5g03377	ATGATCATGATTATGAATGATAGGATGAGGTCTGCGATTCTTGTTCTGCTTCAGGAATTTTGCCATAGTCCGAATCAGATTCGGCAGATTCAAGCGCAACTGATCCTCCAGAACCTGTACCCAAACACCAGAATCGCGGAGCACTTCATCGGCGCGTGCCAATCACACGGCCTTCTCAACTCTGCTCTTCTTCTCTTCACCACCCTCCTTCCCCATCCCCACGTTTACACCTTCAACACCCTCATCAGAGCCTTCTCCAAATCCCAAACCCAAACCCCTCTCTTCATATACACCCACATGCACCGCAACTCCGTCCTCCCCAACAACTTCACCTTCCCACCCCTCTTCAAGTCCCTCTCCGACACGCAAGCGCAATGCGTCCACACCCACGTTCTCAAACTCGGCCACCATCAGGACCTCTACGTCCGCAACTCCCTCCTCGACGTCTACGCCTGGTGCCGCCACGTGGCACTGTGTCGCTGCCTGTTCGACGAAATGCCTCACAGGGATGTTGTGTCCTGGAGCGTGCTGATCGCCGGGTACAACAACGTTGGCAGCTACGATGATGCCTTGGTTGTCTTTGAACAGATGCAGTATGCGGGCTTTGTGCCTAATAGGGTCACCATGATAAACGCGTTGCACGCTTGTGCTCACTCTGGGAATGTTGAAATGGGGACGTGGATACATGGTGCCATAAAAAGGGAGGGTTGGGAATTGGATGTCATATTGGGGACGGCGTTGATTGACATGTATGCGAAGTGTGGGAGAGTGGAAGAGGGGTTGAGTGTGTTCTTGAACATGAAAGGGAAGAATGTGTTTACTTGGAATGCGCTTATTAAAGGGTTGGCTTTGGCCAAGAGTGGACAAGAGGCAATTTGGTGGTTTAACAGAATGGAGAAGGACGGTGTTAGAGCGGACGAAGTGACTTTGTTGGCGGTTCTATCTGCGTGCAGTCACGCGGGTTTGGTGGATAAGGGTCGAGAGATTTTTGGTTTGTTGGTTGATGGGAGGTATGGGTTTTGTGCTAATGTTAAACACTATGCTTGTATGGTTGACGTGTTGGCACGTTCTGGAAGTTTGAAAGAGGCTGTTGAGTTCATGAGATGTATGCCTTTTGGACCCACCAAGGCTATGTGGGGATCGTTGTTGGTTGGTTCTAAAGCTCAGGGTGACTTGGAGTTGGGCCTGCTGGCAGCTGGAAAGCTCATTGAATTGGAGCCGGAGAATACTTCCTATTATGTTCATCTGTCAAATCTGTATGCGGCAATGGGAAGATGGAATGATGTTGAGAAAGTGAGGGGGGTGATGAAGGTTAGGCAACTGACCAAGGACTTGGGGTGTAGTTCTGTGGAGGTAGAACACCTGAGGCATGTTGGTGAACTTTTGGCATAG	1392	0.5036	MIMIMNDRMRSAILVLLQEFCHSPNQIRQIQAQLILQNLYPNTRIAEHFIGACQSHGLLNSALLLFTTLLPHPHVYTFNTLIRAFSKSQTQTPLFIYTHMHRNSVLPNNFTFPPLFKSLSDTQAQCVHTHVLKLGHHQDLYVRNSLLDVYAWCRHVALCRCLFDEMPHRDVVSWSVLIAGYNNVGSYDDALVVFEQMQYAGFVPNRVTMINALHACAHSGNVEMGTWIHGAIKREGWELDVILGTALIDMYAKCGRVEEGLSVFLNMKGKNVFTWNALIKGLALAKSGQEAIWWFNRMEKDGVRADEVTLLAVLSACSHAGLVDKGREIFGLLVDGRYGFCANVKHYACMVDVLARSGSLKEAVEFMRCMPFGPTKAMWGSLLVGSKAQGDLELGLLAAGKLIELEPENTSYYVHLSNLYAAMGRWNDVEKVRGVMKVRQLTKDLGCSSVEVEHLRHVGELLA	463

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo5g03377	463	Gene3D	Tetratricopeptide repeat domain	124	222	IPR011990	GO:0005515
	Pumo5g03377	463	PANTHER	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	169	455	IPR046960	GO:0003723\|GO:0009451
	Pumo5g03377	463	NCBIfam	pentatricopeptide repeat	172	205	IPR002885	-
	Pumo5g03377	463	NCBIfam	pentatricopeptide repeat	245	271	IPR002885	-
	Pumo5g03377	463	NCBIfam	pentatricopeptide repeat	273	306	IPR002885	-
	Pumo5g03377	463	FunFam	Pentatricopeptide repeat-containing protein At1g50270	113	224	-	-
	Pumo5g03377	463	FunFam	Pentatricopeptide repeat-containing protein, chloroplastic	242	460	-	-
	Pumo5g03377	463	Gene3D	Tetratricopeptide repeat domain	7	123	IPR011990	GO:0005515
	Pumo5g03377	463	Gene3D	Tetratricopeptide repeat domain	336	458	IPR011990	GO:0005515
	Pumo5g03377	463	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	271	305	IPR002885	-
	Pumo5g03377	463	Pfam	E motif	391	451	IPR046848	-
	Pumo5g03377	463	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	170	204	IPR002885	-
	Pumo5g03377	463	SUPERFAMILY	TPR-like	174	430	IPR011990	GO:0005515
	Pumo5g03377	463	Gene3D	Tetratricopeptide repeat domain	223	335	IPR011990	GO:0005515
	Pumo5g03377	463	Pfam	PPR repeat	347	370	IPR002885	-
	Pumo5g03377	463	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	240	270	IPR002885	-
	Pumo5g03377	463	Pfam	PPR repeat family	169	217	IPR002885	-
	Pumo5g03377	463	Pfam	PPR repeat family	270	318	IPR002885	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo5g03377	Pumo-Chr5	82877145	82878536	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo5g03377	53	452	Glycoside Hydrolase	AT3G49170	30.467	5.90e-59	206

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo5g03377	-		-	gmx:102664320	787.334