Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03335 ATGTTAAGAATGGGTTTGAGAAACAGTTGCAACATTTCCTATTCAAGGGCTTTGTTTACTGAGAGCTTCCACAGATTACTGTCTACTCAGACTGTAGGGAAGCTACAAGACAAGGTTGCGCTGATCACGGGAGCAGCTAGTGGAATAGGAAAGGCAACAGCTACCAAATTCATCAATAATGGAGCCAAGGTTATTATTGCTGATATACATAAACAGCTTGGCCAAGAGACTGCAAAAGAACTAGGACCTAATGCTACTTTCATAACATGTGATGTCACTCGAGAGTCAGACATTTCCAATGCTGTTGATTTTGCTATTTCTAAATACAAACAACTTGATATCATGTACAACAATGCAGGGATACCCTGCAGAAGTCCTCTAAGCATTGTTGACCTTGACCTGGCAGTGTTTGACAAAGTCATGGACATAAATGTTCGTGGTGTTGTGGCAGGCATCAAGCATGCAGCACGTGTAATGATCCCACGTGGAAGTGGGTCAATTCTCTGCACAGCAAGTGTCACAGGTTTGATGGGAGGGGTGGCCCAGCACACTTACTCAATATCCAAGTTTGCAGTTATAGGCGTTGTTAAATCTCTGGCTTCAGAGCTATGCAGGCATGGAATCCGAGTCAATTGCATATCACCTTTTGCTATTCCCACACCTTTTGTCATGGGAGAAATGAGTCATATGTATCCTCATGTTGATGCTCAGAGACATGTGGACATTGTTCACAATGCTGGTGTCCTAAAGGGTGTGAATTGTGAACCCAATGATATTGCTAATGCTGCACTTTTTCTTGCGTCTGATGATGCCAAGTATGTTAGTGGACACAGCTTGGTTGTGGATGGAGGTTTCACATCTTTTAAGAATTTGGACTTTCCTGCACCAGATCAAGTGCAGTAG 903 0.4308 MLRMGLRNSCNISYSRALFTESFHRLLSTQTVGKLQDKVALITGAASGIGKATATKFINNGAKVIIADIHKQLGQETAKELGPNATFITCDVTRESDISNAVDFAISKYKQLDIMYNNAGIPCRSPLSIVDLDLAVFDKVMDINVRGVVAGIKHAARVMIPRGSGSILCTASVTGLMGGVAQHTYSISKFAVIGVVKSLASELCRHGIRVNCISPFAIPTPFVMGEMSHMYPHVDAQRHVDIVHNAGVLKGVNCEPNDIANAALFLASDDAKYVSGHSLVVDGGFTSFKNLDFPAPDQVQ 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03335 300 FunFam Short-chain dehydrogenase reductase 27 290 - -
Pumo5g03335 300 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 172 200 IPR020904 GO:0016491
Pumo5g03335 300 PRINTS Glucose/ribitol dehydrogenase family signature 249 269 IPR002347 -
Pumo5g03335 300 PRINTS Glucose/ribitol dehydrogenase family signature 110 121 IPR002347 -
Pumo5g03335 300 PRINTS Glucose/ribitol dehydrogenase family signature 185 204 IPR002347 -
Pumo5g03335 300 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Pumo5g03335 300 PRINTS Glucose/ribitol dehydrogenase family signature 206 223 IPR002347 -
Pumo5g03335 300 PRINTS Glucose/ribitol dehydrogenase family signature 159 175 IPR002347 -
Pumo5g03335 300 Pfam Enoyl-(Acyl carrier protein) reductase 44 286 - -
Pumo5g03335 300 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 36 286 IPR036291 -
Pumo5g03335 300 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 32 289 - -
Pumo5g03335 300 Gene3D - 26 292 - -
Pumo5g03335 300 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 185 204 IPR002347 -
Pumo5g03335 300 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 110 121 IPR002347 -
Pumo5g03335 300 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 173 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03335 Pumo-Chr5 82487379 82489774 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03335 15 285 Acyl Lipid Metabolism Gene Families AT1G24360 29.825 2.25e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03335 - - gmx:100814306 527.709