Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03334 ATGGGGCTGATTGTAAGATATAAAGTTAAAGACGCAAATGAAGATGATTCATCTAGGGAAACCGAGCTCTTTGAGGACACCTTAGTGCTCAATAGTCCTTTCACTGAAATGGAGGTTGAAAATCTCAATCTGAACACTCAGATTGTAGAGGATTCGGAGCCTGCAGAGGACATGACAACTGGTACAATGTGCGAGTACGAACAAGTTGTGCTTGATAGTGAGGACGAAGAAATGAATGATAGAGATGTCGGCAAAGGATTTCATAAGGATGAAACTAGTCCAACAGTGAAAATTCCTTCGACTCTCTTTCAGAAGAGACAGCCCAAGCCACCTTGTGAGCAAGTAGATGCAAATGGCATCACTTTTGGCAAGTTTGCTGCTGATCATAATATGCCTGAAGGGTACAAAGGAGCTTTAGTTGATGCTGACAGCTTTGATGACAACAACCATTTATATCCACCTGCAATGCCAAGTCACATTCACTCACCAGAGCCTGGGGATTCAACCCAAGCTGCACTTGGCTTTGTGGATCAGTACTTGTCATCAAATGATGTGGACTTGTTTCAAGGAATTCATTGTGGAAAGACCACTAGGGCAAAATCATCTCATGTCCTGAGTGCAAGAGGACCACTAAATCTGGCTAAGAAAATTAAAGCTCGAACTCAAAATGAAGAAAAAGAACCTTTCAAATGGGTTGACAGTTGCCAACATGACAACAAAGCTGGTATGTTTGGTAAAAAAATTGAAGCATCTTCAAATTTTGGAAGATACAAACAGACATATACGAGAAGAAGACAGAAAAAAGGTGGCCATCTTCAGAGCCAAGGAAACTGTAATACAAGTAATAGATGTGATGAGAAGTTAGGCCATGGACCGAGAATGGCAACTGAAAATAATAACTTTCTCAAGGAATTGGATGTTCAACCAAGTGCTATAAGTGAGAATGTTAATGTTTCTTCCAGTGTAACACATATAGAAGACATGTATGATATTGGTTTAGACACTCAAATAGCTGCTGAAGCTATGAATACCTTAGCCTTTGTGCCCCCTTCTGGCTGCCAGTTCAATGATACTCATCAACCAGAGAATGCATTAGATGTCTCTTTGAGCGATTTGACAGAAAATGAAGCTCATCTGAAAAATTCTTCATATTTTCAGAATCCTGGTTTACATTCTATCACAATAAAATCAAATAAGAAAAATGCATCTTCCTCTAGATTTAGTAAAATAACTTTTAGCTCATCTTGCAAGCACACTGACAAGCAGGAGCCAAATCTTGTATCATGGAAAACGAAAAAAATGAGAAGCAAGTCAACTTCTGAGGGACAGTTTGCAAATAATACTAGTTTGCCAATACGCAGTAAACAAGTATCGCTTGAAGAGGTTTGCTCACTGGGAGAGTATACAAGTTTCCAACCTGCTGCCGAAGAACCCGAAAATTGGAACAATGAGAGCATACAGACAAGAATCAAAGATCAACCAAGCCATCATACAGAGGGGAACAATAATGTCAAGGAGAAGGGTATTAAACACAAGAGGAAGGGGGATGGTTTAGTGGCTGATCCAGTGAAGTTGGGTGTTAGGACAAAGCGTCTTAAATTGCCTACCAATTCACGTACATTAGTCCACAGTTATCTGCAAGCCAGCAGTTTTTCAAGGACTGATTCTTGGGTTTATCCAAAAAGATCGAGAGGGAAAAGAAAGGGGGCTAATGTGGGAACCAATCTTGATGCACCAACAGTTTTGTGTATTGATGGAAAAGAAAACAATGTCTTCTCCACTAGAAGTCTAGAGGATCAAGCTGACGTGGATAAATCATGTTTTCCTCACACTCGTCCACCCTGCAATGCTTCATGTGTAGACAATGGCAGATGCTTGTTACAGGGGAACTTTGTGCCACCAGGTTCAGCTGATGATGCAATGAAGGTAGAAAACTTGCATGATATGCACCCCTTATTGCTGGCACATGTTGAAATATCATCAAACAAAAGCGTTGCACAATCGAGATCAGAATTTCCAGCTACAGTTACTGCAAGCAAAGGCATAAAATTTTCAAATGCTAACCATACATACACTGAGCATCACAAAAAGCCATGTAAAAAAACCCTGCCAAAGACTTCAGTTTTGAAAGAGCTTATTGGATTAGGAGTTCCCGAGTTCACGTCAGGTATTATGTGGAAAGATCTGAGACATCGAAGAGATATGACAGATGTTCGAGTTCTGTTTAGCCAACATTTGGATGACAGTATTATCAAGCAGCAAAAAAAGATCTTGGCACGTCTCAATATATCTGTTGCATCAAGTTCAATGGAGGCCACACATTTCATAGCAGACAAATTTACACGCACAAAGAATATGTTGGAAACAATGGCTCTTGGGAAATCAGTCGTGAATCACTTATGGCTTGAGAGCTGTGGACAAGCCAACTGTTTTATTGACGAGAAAAATTACATTCTGAGGGATATGAAAAAGGAAAAGGAAATAGGCTTTAACATGCCTGTTTCTCTTGCTCAAGCAAGACAGAAGCCACTCCTAAAGGGTAAAAGAGTCTACATCACGCCACATATTAAACCTGATAAGGAAGTGGTTGCAAGTTTGGTCACAGCTGTTCATGGCCAGGTAGTTGATGAAAGTGAGGTGTGCGCAGACATGAATGATAATATCTTAGATGATCTGTTGATTCTTTCTTGTGAAGATGACTATGCAATATGCCACCGTTTCCTTAAGAGAGGAACTGCAGTTTACAGTTCAGAGCTTGTTCTGAATGGAATTGTAATCCAAAAATTGGAACTTGAGAGACACCAACTCTTCATGAATCAAGTTACAAGGAATAACCCAAGTGCGTCTAATCGGTTTGGGAAGATTTACAGAAGGCGTTGA 2880 0.4017 MGLIVRYKVKDANEDDSSRETELFEDTLVLNSPFTEMEVENLNLNTQIVEDSEPAEDMTTGTMCEYEQVVLDSEDEEMNDRDVGKGFHKDETSPTVKIPSTLFQKRQPKPPCEQVDANGITFGKFAADHNMPEGYKGALVDADSFDDNNHLYPPAMPSHIHSPEPGDSTQAALGFVDQYLSSNDVDLFQGIHCGKTTRAKSSHVLSARGPLNLAKKIKARTQNEEKEPFKWVDSCQHDNKAGMFGKKIEASSNFGRYKQTYTRRRQKKGGHLQSQGNCNTSNRCDEKLGHGPRMATENNNFLKELDVQPSAISENVNVSSSVTHIEDMYDIGLDTQIAAEAMNTLAFVPPSGCQFNDTHQPENALDVSLSDLTENEAHLKNSSYFQNPGLHSITIKSNKKNASSSRFSKITFSSSCKHTDKQEPNLVSWKTKKMRSKSTSEGQFANNTSLPIRSKQVSLEEVCSLGEYTSFQPAAEEPENWNNESIQTRIKDQPSHHTEGNNNVKEKGIKHKRKGDGLVADPVKLGVRTKRLKLPTNSRTLVHSYLQASSFSRTDSWVYPKRSRGKRKGANVGTNLDAPTVLCIDGKENNVFSTRSLEDQADVDKSCFPHTRPPCNASCVDNGRCLLQGNFVPPGSADDAMKVENLHDMHPLLLAHVEISSNKSVAQSRSEFPATVTASKGIKFSNANHTYTEHHKKPCKKTLPKTSVLKELIGLGVPEFTSGIMWKDLRHRRDMTDVRVLFSQHLDDSIIKQQKKILARLNISVASSSMEATHFIADKFTRTKNMLETMALGKSVVNHLWLESCGQANCFIDEKNYILRDMKKEKEIGFNMPVSLAQARQKPLLKGKRVYITPHIKPDKEVVASLVTAVHGQVVDESEVCADMNDNILDDLLILSCEDDYAICHRFLKRGTAVYSSELVLNGIVIQKLELERHQLFMNQVTRNNPSASNRFGKIYRRR 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03334 959 Gene3D BRCT domain 726 842 IPR036420 -
Pumo5g03334 959 CDD BRCT_PAXIP1_rpt6_like 844 930 - -
Pumo5g03334 959 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 74 936 - -
Pumo5g03334 959 SUPERFAMILY BRCT domain 731 835 IPR036420 -
Pumo5g03334 959 Gene3D BRCT domain 843 944 IPR036420 -
Pumo5g03334 959 ProSiteProfiles BRCT domain profile. 730 819 IPR001357 -
Pumo5g03334 959 CDD BRCT_MDC1_rpt1 738 812 - -
Pumo5g03334 959 MobiDBLite consensus disorder prediction 490 513 - -
Pumo5g03334 959 MobiDBLite consensus disorder prediction 264 292 - -
Pumo5g03334 959 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 733 819 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03334 Pumo-Chr5 82477067 82481473 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03334 K14972 - gmx:102659913 1644.79