Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03315 ATGGCGGTTTCGGAAGAAGAATGCTCTTCTGCGAAGTCAGGTCCCTCTTCTTCGTCTTCCTCCGCCTCGCGCTACTACCTCTCCAAGTGCGTTCTCAGAGGCAGCGTCGTTCTTCAGGTCCTCCACGCTCACATCCGTTCTCCTTCCTCAAATGACGTCGTTTTCGGCAAGGAGACATCTATTGAATTGGTGGTTATTGATGAGGATGGGAATGTGCAATCCGTGTGCGATCAGCCTGTCTTTGGCACCATCAAAGATCTCGCCATATTGCCCTGGAATGAGAAATTTCGCGCACGTGATCCGCAGCTGTGGGGTAAAGACCTTTTGGTTGCTACATCTGATTCCGGGAAGCTGTCGTTGCTCACATTTTGCAATGAAATGCACAGGTTTGTTCCTGTAACACATATTCAGCTATCTAATCCTGGTAACATAATTGATCTTCCGGGAAGAAAGCTAGCAGTTGATTCCAGTGGTTGTTTTATTGCTTCCAGTGCATACGAAGATCGGCTGGCTTTGTTTTCTCTGTCAATGTCCAGTGGTGATATCATTGAAGAGAGAATTGTATATCCTTCTGAAAGTGAAGGGACTGCAAGTATTTCCAGAAGCATCCAGAGAACCAGTATACGTGGTACTATTTGGAGCATCTGCTTCATTTCACAAGATTCCAGACAACCAAGCAAGGAGCATAATCCTGTACTGGCTGTTATTATAAATAGGAGGGGAGCGCCTCTAAATGAATTGCTATTATTGGAATGGAATGTTAAAGCACATAAAATATTTGTTATTTCTCAGTATGTTGAAGCTGGGCCTCTAGCACATGACATTGTTGAAGTTCCTAACTCCGGGGGACTTGCATTTCTATTCAGGGCTGGTGATGTTCTCTTAATGGATCTTAGAGATCATTGCAACCCATCCTGTGTCTGTAAGACTAACTTGAACTTTTTACCCAATGCCATGGAAGAGCAGACTTATGTGGAAGACTCTTGTAAATTACATGATGTTGATGATGAACGCTTTAGTGTTGCTGCCTGTGCTTTGTTGGAGCTGAGTGATTATGATCCTATGTGCATAGACAGTGACAATGGTGGTGCTAATTCAGGTTACAAATACGTATGCTCGTGGAGTTGGGAACCTGAAAATAATAGAGATCCTAGGATGATCTTCTGTGTAGATACTGGGGAATTTTTTATGATTGAAGTTCTTTTTGATTCTGAAGGCCCTAAAGTTAATCTGTCTGAGTGTCTCTATAAAGGTCTACCCTGTAAAGCACTTTTGTGGGTTGAAGGTGGATATCTAGTTGCCCTTGTGGAAATGGGGGATGGTGTGGTCCTGAAATTAGGAGATGGAAGGCTGTGCTATACAAACCCTATTCAAAACATTTCACCAATCTTGGATATGGCAGTTGTAGATTATCATGATGAGAAGCATGATCAAATGTTTGCTTGCTGTGGTGTGGCACCAGAGGGGTCATTAAGGATTATTCGAAATGGTATTAATGTGGAAAATCTACATAGGACTGCTTCTATGTATCAAGGGGTAACTGGTACTTGGACTGTCCGAATGAAAGTTACGGATTCACACCATTCTTTTCTAGTTCTATCATTTGTTGAGGAAACCAGAATATTGTCAGTTGGCTTAAGTTTTACTGATGTGACTGATTCAGTTGGTTTCCAACCTAATGTCTGTACTTTGGCATGCGGCCTTGTGACTGATGGTTTGCTTGTCCAGATCCACCAATCTACTGTTAAGCTCTGTTTGCCCACTAAGGCTGCTCATTCTGAAGGTATCCCTTTGTCCTCTCCTATTTGCACATCCTGGTCTCCAGACAATGTGACTATCAGTTTGGGGGCAGTTGGGCATAATTTCATAGTTGTGTCAACCTCTAACCCATGCTTTCTGTTTATCCTTGGGGTTAGATTGCTATCAGCTTATCAATATGAAATTTATGAAATGCAACATTTGGTACTGCAGAATGAATTATCATGCATATCCATCCCTGGACAAGGAATTGAGCAAAAACAATCAAATTCATGCATTTCAGCAAATAATAGTAGCATCTCTTCTTTTCAAAGTGGAGTGGACATCAATAAAACCTTTGTTATTGGCACACATAGGCCTTCTGTGGAAATTTGGTTTTTTGCACCAGGTGGAGGAATTACAGTAGTTGCTTGTGGGACAATTTCATTAATGAATACAATAGGGACTGCCATAAGTGGTTGTGTACCTCAAGATGTACGGCTTGTATTTGTTGATAAGTATTATGTTCTTGCGGGATTGAGGAATGGAATGCTCCTTCGGTTTGAGTGGCCGGTGGAACCATGTCCTTCATCACCAATAAATATGGTGGATACTGCTTTATCTTCTATAAATTTGGTAAATTCTGTGACTAATGCTTTTGACAAGAGAAGTGACCTTCCTTCCATGCTTCAATTGATTGCCATTCGACGCATTGGCATTACTCCAGTTTTCTTGGTGCCCCTGGGTGACACACTGGATGCAGATATAATTGCTCTTAGTGATAGGCCTTGGTTGTTGCATAGTGCAAGACACAGCCTTTCCTATACTTCTATCTCATTTCAACCATCCACACATGTAACTCCTGTTTGCTCTGTTGAGTGTCCAAAAGGAATCTTATTTGTTGCAGAAAACAGTTTACATCTGGTGGAGATGGTCCACAGCAAGAGACTTAATATGCAGAAGTTTCATTTAGAGGGCACTCCACGGAAGGTCCTGTATCACGATGAAAGCAAGATGTTGCTTGTGATGAGGACTGAACTGAATTGTGGTACATGTTTGTCTGACATATGTTGTGTGGATCCCCTGAGTGGGTCAGTACTGTCGTCTTTTAGACTTGAACTTGGAGAAACAGGAAAATCCATGGAATTAGTAAGAGTTGGAAGTGAGCAGGTGCTTCTCGTTGGAACTAGTCTGTCTTCTGGTCCACACACAATGCCCACTGGTGAAGCTGAAAGTTGCAAGGGTCGTCTTCTTGTTCTCTGTCTTGATCATGTGCAAAATTCAGACAGTGGTTCAATGACGTTCTGTTCAAAGGCAGGGTCATCATCTCAAAAAACTTCACCATTCCATGAAATTGTTACATATGCTCCTGAACAGTTATCGAGCAGTAGCCTTGGCAGCAGTCCTGATGATAATAGTTCTGATGGCATCAAACTTGATGAAAATGAAGTATGGCAGTTCCGATTGGCTTATGCAACTAAATGGCAGGGAGTGGTACTTAAAATCTGTCCTTATCTTGATCGTTACTTCTTGGCAACTGCTGGCAATGCTTTCTATGTTTGTGGTTTCCATAATGACAATCCTCAAAGAGTAAGAAGGTATGCTATGGGAAGGACGCGTCACATGATAACATCTTTGACTGCACATTTTACTAGAATTGCAGTTGGTGATTGTCGTGATGGTATCCTTTTATATTCTTATCATGAGGAAGCAAGAAAATTGGAGCTACTTTACAATGACCCATCACATAGGGTAGTTGCCGATTGCATTCTCATGGATGCTGATACGGCTGTTGTTTCAGATCGTAAGGGAAGCATGGCTGTTTTATGTTCAGAACACTTGGAAGACAATGCAGGTACACAATGCAACATGAAACTAAGCTGTGCTTATTTCATGGCTGAGATAGCCATGAGCATCCAGAAGGGCTCATATTCATACAGACTTCCAGCTGATGATGTTTTGCAAGGTGGAAATGGCCCAAAGACAAATGTTGATTCATTACAAAATACTATTATTGCTAGTACCCTATTAGGAAGCATAATGATCTTCATCCCTTTATCAAGGGAAGAGTATGAGCTCTTAGAAGCAGTGCAAGCAAGACTTGTTGTCCATCATTTGACAGCGCCTGTTCTAGGAAATGATCATAATGAGTTTCGCAGTCGTGAAAATCGGGTTGGAATACCTAAGATACTTGATGGTGACATGTTGACCCAGTTTCTGGAGCTGACAAGTCTGCAGCAAAAGATGATTTTGTCTTCGGAGCCACCGGATATGGTAAAACCAAGTTTGAAGCCACTCCTACCCTCCCATGTTTCTGTAAATCAGAACGCGGAACATGCATATGCAGTTCTAAACAATATTGTCTGTCAACGGTTGCGTGCCTGCCTCTCAAAGTGTTGTCAGATATAG 4146 0.4206 MAVSEEECSSAKSGPSSSSSSASRYYLSKCVLRGSVVLQVLHAHIRSPSSNDVVFGKETSIELVVIDEDGNVQSVCDQPVFGTIKDLAILPWNEKFRARDPQLWGKDLLVATSDSGKLSLLTFCNEMHRFVPVTHIQLSNPGNIIDLPGRKLAVDSSGCFIASSAYEDRLALFSLSMSSGDIIEERIVYPSESEGTASISRSIQRTSIRGTIWSICFISQDSRQPSKEHNPVLAVIINRRGAPLNELLLLEWNVKAHKIFVISQYVEAGPLAHDIVEVPNSGGLAFLFRAGDVLLMDLRDHCNPSCVCKTNLNFLPNAMEEQTYVEDSCKLHDVDDERFSVAACALLELSDYDPMCIDSDNGGANSGYKYVCSWSWEPENNRDPRMIFCVDTGEFFMIEVLFDSEGPKVNLSECLYKGLPCKALLWVEGGYLVALVEMGDGVVLKLGDGRLCYTNPIQNISPILDMAVVDYHDEKHDQMFACCGVAPEGSLRIIRNGINVENLHRTASMYQGVTGTWTVRMKVTDSHHSFLVLSFVEETRILSVGLSFTDVTDSVGFQPNVCTLACGLVTDGLLVQIHQSTVKLCLPTKAAHSEGIPLSSPICTSWSPDNVTISLGAVGHNFIVVSTSNPCFLFILGVRLLSAYQYEIYEMQHLVLQNELSCISIPGQGIEQKQSNSCISANNSSISSFQSGVDINKTFVIGTHRPSVEIWFFAPGGGITVVACGTISLMNTIGTAISGCVPQDVRLVFVDKYYVLAGLRNGMLLRFEWPVEPCPSSPINMVDTALSSINLVNSVTNAFDKRSDLPSMLQLIAIRRIGITPVFLVPLGDTLDADIIALSDRPWLLHSARHSLSYTSISFQPSTHVTPVCSVECPKGILFVAENSLHLVEMVHSKRLNMQKFHLEGTPRKVLYHDESKMLLVMRTELNCGTCLSDICCVDPLSGSVLSSFRLELGETGKSMELVRVGSEQVLLVGTSLSSGPHTMPTGEAESCKGRLLVLCLDHVQNSDSGSMTFCSKAGSSSQKTSPFHEIVTYAPEQLSSSSLGSSPDDNSSDGIKLDENEVWQFRLAYATKWQGVVLKICPYLDRYFLATAGNAFYVCGFHNDNPQRVRRYAMGRTRHMITSLTAHFTRIAVGDCRDGILLYSYHEEARKLELLYNDPSHRVVADCILMDADTAVVSDRKGSMAVLCSEHLEDNAGTQCNMKLSCAYFMAEIAMSIQKGSYSYRLPADDVLQGGNGPKTNVDSLQNTIIASTLLGSIMIFIPLSREEYELLEAVQARLVVHHLTAPVLGNDHNEFRSRENRVGIPKILDGDMLTQFLELTSLQQKMILSSEPPDMVKPSLKPLLPSHVSVNQNAEHAYAVLNNIVCQRLRACLSKCCQI 1381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03315 1381 FunFam Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 498 895 - -
Pumo5g03315 1381 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 30 1332 - -
Pumo5g03315 1381 Gene3D - 504 895 IPR015943 GO:0005515
Pumo5g03315 1381 MobiDBLite consensus disorder prediction 1 22 - -
Pumo5g03315 1381 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 107 665 IPR018846 -
Pumo5g03315 1381 Gene3D - 36 455 IPR015943 GO:0005515
Pumo5g03315 1381 Pfam CPSF A subunit region 935 1320 IPR004871 GO:0003676|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03315 Pumo-Chr5 82313528 82327234 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03315 K12830 - gmx:100806799 2590.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03315 5 82313528 82327234 Pumo5g03315 5 82313528 82327234 ECH