Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03303 ATGAAATTCGGGTCTGCATTCAGAGAGTACCTGCAGGAAGAGCGGGAGTGGCTCGTGGATGAGAAATGTGCCCACGTTCAATATATCAGGCTAAAGAAAGTGTTGAAGAGTTGCCAGAAAGATACTTCTTCTGATAAAGACCAGTTATGTCAGTGTCAGTCTTGCCCATTGTGTGATCAACAGTTCTTCTCTGAGTTGATGAAGGAAGCATCAGATGTAGTAGGATACTTTAGTTCAAGAGTTAAGCATCTCCTTCATCTTCATATTGCAACAGGAATGCAGAGATATGTATTGCGTTTGCGCCAGTGCTTTAAAAATGATAGGCAAGCCCTTACCCAAGAAGGGAGGATTCTAATTGAGTACATTGCAATGAATGCTATTGCAATGAGGAAAATACTTAAGAAATATGATAAAGTACACAGCTCTGTGAATGGGGAGAATTTCAAATCTAGGATGCACGCTGAACACATTGAACTTTTGCACTCACCTTGGCTAATTGAATTGGGTGCTTTTTATCTGAATTCTAGTGGACTAGATGGTTGTGAGCTTGATGGAGTCTATGGTCACTTTTCGTGTGATCTAAACATAACTGAAGCTGTAATGACGTTGACTCTTCCTGATTCTATTAAGCTCGAGTATGATCTAACTTGTGCAATTTGCCTGGATTTTGTTTTCAACCCATATGCTTTGAGTTGTGGTCATATCTTCTGCAAGTCATGTGCTTGCTCAGCTGCCTCTGTGATGATTTTTCAAGGCCCTAAAGCTGCTAGTCCAGAGTCAAAGTGTCCTATATGCAGAGAGGTTGGAGTTTATTCTAAGGCTGTGCGTATGTTAGAACTTGATCTGCTTGTGAAAAGAAGGTGCAAAGACTATTGGAAAGAGAGGGTAGCTGGTGAACGAGTTGATACATTGAAGCAATCTAAGGAATACTGGAATTTACAGTCCACATATGCAGTTGGATTGCTGTAG 969 0.4087 MKFGSAFREYLQEEREWLVDEKCAHVQYIRLKKVLKSCQKDTSSDKDQLCQCQSCPLCDQQFFSELMKEASDVVGYFSSRVKHLLHLHIATGMQRYVLRLRQCFKNDRQALTQEGRILIEYIAMNAIAMRKILKKYDKVHSSVNGENFKSRMHAEHIELLHSPWLIELGAFYLNSSGLDGCELDGVYGHFSCDLNITEAVMTLTLPDSIKLEYDLTCAICLDFVFNPYALSCGHIFCKSCACSAASVMIFQGPKAASPESKCPICREVGVYSKAVRMLELDLLVKRRCKDYWKERVAGERVDTLKQSKEYWNLQSTYAVGLL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03303 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 316 IPR013083 -
Pumo5g03303 322 ProSiteProfiles Zinc finger RING-type profile. 217 266 IPR001841 -
Pumo5g03303 322 SUPERFAMILY RING/U-box 209 268 - -
Pumo5g03303 322 CDD RING-HC_BAH1-like 207 280 - -
Pumo5g03303 322 ProSitePatterns Zinc finger RING-type signature. 232 241 IPR017907 -
Pumo5g03303 322 SMART ring_2 217 265 IPR001841 -
Pumo5g03303 322 CDD SPX_BAH1-like 2 145 - -
Pumo5g03303 322 ProSiteProfiles SPX domain profile. 1 150 IPR004331 -
Pumo5g03303 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 320 IPR033326 -
Pumo5g03303 322 Pfam zinc-RING finger domain 217 266 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03303 Pumo-Chr5 82228960 82232485 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03303 K16275 - gmx:100781704 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03303 5 82228960 82232485 Pumo5g03303 5 82228960 82232485 ECH