Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03289 ATGGATTCCTCTTCCATCTATGGTGTCTCACACTTCCTCACCCTCTTCCTTCTCCTCCTTCTACCACTCCATTCTCACTCAGCATTCTCTCACAACTCCTCAACCTCCTGTCAGATTAACTCCAACTCCATCCTCGTCGCTCTTCTCGATTCTCATTACACCGAACTCGCCGAGCTCGTCGAGAAAGCGCTTCTCCTCCAGAAGCTGGAAGACGCCGTCGGCAACCACAACATCACCATCTTCGCGCCACGAAACCAAGCCCTAGAACGCGACCTCGACCCCGAATTCAAGCGATTCCTGCTCGAGCCTCGCAATCTCAGGTCGCTCCAGACGCTCTTAATGTCTCACATTCTCCCCACGCGAATTGCCTCTCACCACTGGCCCGCCGCCGACCTCCGCCACCGCACTCTCTCCGACCACCACCTGCATTTGGCCACCAAGTCCTCCGGCCAGAGAACCGTCGACTCCGCCGAGATCCTCCGCTCCGACGACGTCGTCCGCCCCGACGGCGTCATCCACGGCATCGAGCGCCTCATCGTCCCCCGATCGGTCCAGGAGGACTTCAACCGCCGCCGCAACCTCGCCGCCATCTCCGCCGTCCTCCCGGAGGGCGCGCCGGAGGTCGATCCCCGCACTCACCGCCTCAAGAAGCCCGCTCCCGTCCCCGCCGGCGCGCCTCCGGTGCTCCCAATCTACGACGCCATGGCGCCAGGACCGTCCATCGCACCGGCGCCGGCGCCGGGACCGGGAGGCCCGAAGCACCACTTCAACGGCGAGCGCCAGGTGAAGGACTTCATCCACACGCTCCTGCATTACGGAGGCTACAACGAAATGGCCGATATTCTCGTCAACCTAACCTCTCTCGCCACCGAAATGGGAAGGCTAGTTTCCGAAGGTTACGTTCTCACCGTTTTGGCTCCAAACGACGAAGCCATGGCCAAGTTAACCACGGATCAGTTGAGCGAACCCGGTGCACCGGAACAGATTATGTACTATCACATCATTCCTGAGTATCAAACCGAAGAGAGTATGTACAATGCGGTTAGAAGGTTCGGTAAGGTTCGGTACGATACCCTGCGGTTACCGCATAAGGTTCTGGCTCAAGAGTCTGACGGCTCCGTTAAATTCGGTCACGGCGATTCCTCCGCTTACCTGTTCGACCCTGATATTTACACTGATGGTAGGATCTCCGTTCAGGGAATTGACGGCGTTCTTATCCCTCCCGAAGAAGAGGAAGAACGCACTCGCCGCACCACTCCACTTGTCAAGGTTGCTGCCGCTAAACCAAGAAGAGGGAAGTTGATGGAAATCGCCTGTAGCATGTTTGGGTCTTTTGGACAAGTCTGCCAATGA 1353 0.5802 MDSSSIYGVSHFLTLFLLLLLPLHSHSAFSHNSSTSCQINSNSILVALLDSHYTELAELVEKALLLQKLEDAVGNHNITIFAPRNQALERDLDPEFKRFLLEPRNLRSLQTLLMSHILPTRIASHHWPAADLRHRTLSDHHLHLATKSSGQRTVDSAEILRSDDVVRPDGVIHGIERLIVPRSVQEDFNRRRNLAAISAVLPEGAPEVDPRTHRLKKPAPVPAGAPPVLPIYDAMAPGPSIAPAPAPGPGGPKHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVLAQESDGSVKFGHGDSSAYLFDPDIYTDGRISVQGIDGVLIPPEEEEERTRRTTPLVKVAAAKPRRGKLMEIACSMFGSFGQVCQ 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03289 450 Pfam Fasciclin domain 52 181 IPR000782 -
Pumo5g03289 450 Pfam Fasciclin domain 297 407 IPR000782 -
Pumo5g03289 450 SMART fasc_3 79 182 IPR000782 -
Pumo5g03289 450 SMART fasc_3 303 408 IPR000782 -
Pumo5g03289 450 Gene3D FAS1 domain 281 408 IPR036378 -
Pumo5g03289 450 Gene3D FAS1 domain 44 181 IPR036378 -
Pumo5g03289 450 ProSiteProfiles FAS1/BIgH3 domain profile. 40 179 IPR000782 -
Pumo5g03289 450 SUPERFAMILY FAS1 domain 40 182 IPR036378 -
Pumo5g03289 450 ProSiteProfiles FAS1/BIgH3 domain profile. 262 405 IPR000782 -
Pumo5g03289 450 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 3 450 IPR044654 -
Pumo5g03289 450 FunFam Fasciclin-like arabinogalactan protein 16 257 408 - -
Pumo5g03289 450 SUPERFAMILY FAS1 domain 241 409 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03289 Pumo-Chr5 82099519 82102675 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03289 - - gmx:100818575 777.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03289 5 82099519 82102675 Pumo5g03289 5 82099519 82102675 ECH