Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03283 ATGCATTGTATTGTATTGTATTCTATGACCCGTTTATCCGAGAGGCTGCTCCGTTTGCGTTGGTTGTTTCCGAAACCGACCCGTTTTCTCGCTCTTGTTTCTCTCTCCACTCTCTGCAAGTCCCTCGCCCGCTTCCTACTCTCCCAAACCCTACCCTTCCTAGCCATGGACAACCTCTTCTCCGAAGACTTCGATTCCTCCCCCTACCGTCCCCACCGCCGCTTCCTCCAACACGACCACCGCGATTTCGCTGCCCTCGAGCGGGTCTACCTGCTCCCCTACAGGTGGTGGGTGGAAGCGGAAGGTGAAGGTGATCGAGGAGAGGGTGTGCTTTATACGGTGTCGTGCAATTCTGATTCCGACTCCGAGATTTTGCTTCATCTGAGGAAGGAAGAGGACCGCCTGAAGATTGGGCTTTCTGCCCGTCAGTATGCCTTGGTTCCTGAGGGACTTTGGTTGCGTGCTCTCAAACGGTATAATGATTTTAATAATGCAGTGAAAGATTTTGGAAGCCTCTCGTATGAAGAGGACTGTTTTCCAGATTTGTTCCCCTTGCAAGTTAAGATATTTGTTTCATGGGAAACCAGTTCACTGGTAGCAAAGATAAGCCAAAAGGAAAATGTGGCTGACTCCTATGAGAAAGCTTGTGACATTTTCAATTCTGCTTATAACCCTATGCATATTTGGGACTTTTCAGGGCAGACAACCCAGCTCTTCTTGAATGACAAATCTAGGTTGCCAAACGATTCTCCTGGTCAACCTGGAAAAGAGGTTGTTCTGGAGTTACAAGTTCACGGACTTCCAGATTCTATGAGGGGTAATGGGGGCAATGAGATGATTTTAGATAGGTCTCAGATGGAATGTTCACATAGCGGCTCTGTTATAATGAATGGAAGCACTGACAATGTGATCCCCTGCGTAACAGCAACCAACCATTTTCGAGGCAGTAGCTGTAGAGCAATTCGATCTTTGGGCTTGACAGGATTACAGAATCTTGGAAATACATGTTTTATGAATAGTGCCATTCAGTGTTTGGCTCACACCCCAAAGCTTGTTGATTTTTTCCTTGGAGATTACCTCAAAGAGATAAATTATGAAAATCCGTTGGGAATGAATGGTGAACTTGCTCTAGCTTTTGGAGACTTGCTTAGAAAGCTGTGGGTTCCTGGAGCAGCGCCCATTGCACCAAGAACGTTCAAGATGAAACTAGCCAATTTTGCTCCTCAGTTTAGTGGTTATAGCCAGCATGACTCTCAAGAACTTCTTGCTTTTTTGTTGGATGGATTGCATGAAGATCTTAATCGTGTAAAACGCAAGCCATATCATGAAGTTAAGGATGCAGATGGTCGTCCAGATGAAGAAGTGGCAGAAGAGTATTGGCGAAATCACCTTGCTCGCAATGACTCCGTAGTAGTTGATTTGTTCCAAGGTCAGTTTCGGTCGACATTGGTTTGCCCTATTTGCAAGAAGGTTTCTATCACATTTGACCCTTTTATGTATCTATCTCTGCCTTTACCTTCTACTATGTTACGGACCATGACTTTGACGGTCATAAGCACTGATGGGATTACATCGCCTTCTACAATTACGGTAACAGTGCCTGAATGTGGAACACTTAAGGATCTTATTGGGGCCTTGAGTGCTTCTTGTTCTCTGAGAGATGATGAAACCCTCTTGGTGGCTGAGATATACAAGAATAACATTTTTCGAGTATACGAGGATCCATCTGATTCGTTAGTTGATATTAGAGATCAAGACAAACTTGTTGCTTACCGAATGCAGATGTATACTGAAGCTAGTCCCTTGGTTGTTTTTATGCATGAACGTTTGGTGGAAAATTTTGGGAAGGAGAGGTTTGAAAACAGGTTGTTTGGTATTCCCCTTGTTACAAGGTGGTCCAGTATTTCTTGTGGATATGATGATGTCCAAAGAGAGTTTCTGAAGTTAATCAATCCATTTCTGATGCGCACTGAAGATGTATTAGATGAGTATGATAAGAATGATGGTGTTAATAAAAGACCAAGTGAAGATGATGAATTGGGTGATACTACTAACTCTGCAGCAATAGGAGATGATGCAGACTCAAACAGTGGAACAGAGGATGACATACATTTGTCAACTGATTTTGAATTCTACTTACAAGGAATAGAGAGGGCCAAGATAATGATGAACAAACCATTACCATCAGTCACAGTGTTGTCGGGAAAGCTGCCTGATGTAGTTGTCTTGTGGTCGGATAAGATGCTTAAAATGTATGATACATACCTGCTTGAGTCATTGCCGGAGGTTTTCAAGCACCAGCTATTCGCCAAGAGAATGCAAGAATCAGTTTCTATTTACAAGTGCCTTGAAGCCTTCTTGAAAGAGGAGCCTCTTGGGCCAGAAGACATGTGGTACTGTCCTAACTGCAAAAAGCCTCAGCAAGCATCTAAGAAACTAGATCTTTGGAGATTGCCTGAAATCCTTGTTGTTCATTTGAAGAGGTTCTCATATAGCCGATACTTCAAGAATAAGCTGGAAACATTTGTTGATTTCCCAATTAATGATCTGGACTTGTCAACGTATGTTGCCCATGGGAATAATCAGTCTTCCAACCGCTATGTGTTATATGCAATTAGTTGTCATTATGGAGGGTTAGGAGGAGGTCACTATACAGCATTTGTCCGTTACGGCTATGATAAATGGTATGATTTTGATGACAGCAGGGTCGAATCTGTTAGGGAGGACATGATAAAGACTCCTGCTGCTTATGTTCTTTTCTACAGGAAAGTTTAG 2775 0.4321 MHCIVLYSMTRLSERLLRLRWLFPKPTRFLALVSLSTLCKSLARFLLSQTLPFLAMDNLFSEDFDSSPYRPHRRFLQHDHRDFAALERVYLLPYRWWVEAEGEGDRGEGVLYTVSCNSDSDSEILLHLRKEEDRLKIGLSARQYALVPEGLWLRALKRYNDFNNAVKDFGSLSYEEDCFPDLFPLQVKIFVSWETSSLVAKISQKENVADSYEKACDIFNSAYNPMHIWDFSGQTTQLFLNDKSRLPNDSPGQPGKEVVLELQVHGLPDSMRGNGGNEMILDRSQMECSHSGSVIMNGSTDNVIPCVTATNHFRGSSCRAIRSLGLTGLQNLGNTCFMNSAIQCLAHTPKLVDFFLGDYLKEINYENPLGMNGELALAFGDLLRKLWVPGAAPIAPRTFKMKLANFAPQFSGYSQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDEEVAEEYWRNHLARNDSVVVDLFQGQFRSTLVCPICKKVSITFDPFMYLSLPLPSTMLRTMTLTVISTDGITSPSTITVTVPECGTLKDLIGALSASCSLRDDETLLVAEIYKNNIFRVYEDPSDSLVDIRDQDKLVAYRMQMYTEASPLVVFMHERLVENFGKERFENRLFGIPLVTRWSSISCGYDDVQREFLKLINPFLMRTEDVLDEYDKNDGVNKRPSEDDELGDTTNSAAIGDDADSNSGTEDDIHLSTDFEFYLQGIERAKIMMNKPLPSVTVLSGKLPDVVVLWSDKMLKMYDTYLLESLPEVFKHQLFAKRMQESVSIYKCLEAFLKEEPLGPEDMWYCPNCKKPQQASKKLDLWRLPEILVVHLKRFSYSRYFKNKLETFVDFPINDLDLSTYVAHGNNQSSNRYVLYAISCHYGGLGGGHYTAFVRYGYDKWYDFDDSRVESVREDMIKTPAAYVLFYRKV 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03283 924 CDD Peptidase_C19R 751 922 - -
Pumo5g03283 924 Pfam Ubiquitin carboxyl-terminal hydrolase 327 921 IPR001394 GO:0004843|GO:0016579
Pumo5g03283 924 MobiDBLite consensus disorder prediction 665 701 - -
Pumo5g03283 924 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 327 924 IPR028889 -
Pumo5g03283 924 MobiDBLite consensus disorder prediction 665 680 - -
Pumo5g03283 924 Gene3D Cysteine proteinases 315 556 - -
Pumo5g03283 924 SUPERFAMILY Cysteine proteinases 325 923 IPR038765 -
Pumo5g03283 924 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 328 343 IPR018200 GO:0004843|GO:0006511
Pumo5g03283 924 Gene3D Cysteine proteinases 682 924 - -
Pumo5g03283 924 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 867 884 IPR018200 GO:0004843|GO:0006511
Pumo5g03283 924 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 276 923 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03283 Pumo-Chr5 82028258 82035667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03283 768 924 Miscellaneous Gene Families AT4G31670 33.750 3.83e-19 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03283 - K21343 gmx:100791802 1668.67