Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03272 ATGATGATGGATCCGGCGATGACGCCGCTGGGGCAAATGCTATTGGAGGAGATCACTCCCGTGGTGATGCTCCTCTCAACTCCTTCCGTCGAAGAAGCTTCCCTCAAGAACGGCCTCTCCTTCCTCCAGACGCTAACGCCGTTCTGTTCCTTCAACAACATCGACGTGCCTGTTAGGACCGCCAGTGACCAACCTTATCGCCTTCACAAGTTCAAATTGCGCTTGTTCTACGCTTCCGATGTGAGGAGGCCCGATTTGAAGGTAGCTAAAGAGCAATTGAAGCAAGTTATCACAGAGGCAGGGGAGAAAGAGTTTTCTGAGTCGTGTTCAGATGTGTCAGAAATTAATCATGAACTTTCGTCGAGTTCTGAATACCAAAATACACCATCCTGGTTTCGGTTTCTCAATAAAGAGCTTGTTCGTGTGGCTTCCTTTTCAGACCATGAAGCATTTGACCATCCTGTGATATGTCTTGTAGCTGTTTCATCAAAGGATGAACAGGCTATTAACAGATTTGTTGACCTTTTTAATACCAACAAGCTTCCTTCCCTTCTTAATGATGGTGCAATGGATCCAAAAATTTCAAAGCATTACTTGTTAGTGCATGATAATCAAGATGGCCCTGCAGACAGAGCAAGTAAAATGTTGACAGATATGAGGAGTACATTTGGTGCAAGTGACTGTTCGTTGCTTTGCATTAATTCTTCCCTGGATGCTCCAATCAAACATCAAGATAATCCTTGGGCTTCATATATAACTGATGCCTCACCTACTCCTAGTCAAGATCTTGGTTGCTTTCTCAACATTGATGATATCAGTGAGATCAAAGATCTAATGCAAGATTTAGCATCTAAGCACGTCATTCCAAATATGGAGCAAAAAATTCGTGTACTCAATCAACAGGTTTCTGCAACACGAAAAGGGTTTAAAAACCAAATAAAAAATTTATGGTGGAGAAAAGGGAAAGAAGACGGTGCAGATTCTCTCAATGGTCCGACGTATAACTTTAATTCCATTGAATCCCAGATTCGAGTTTTGGGTGATTATGCTTTCATGTTACGAGATTATGAACTTGCCTTGTCAAATTATCGCCTAATTTCCACAGATTACAAGATTGATAAAGCCTGGAAGCGTTATGCTGGTGTGCAGGAAATGATGGGACTTACGTACTTCATGTTGGATCAATCAAGAAAGGAAGCCGAGTATTGCATGGAAAATGCTTTTAACACATATTTAAAACTTGGATCATTGGGTCAGCTAAATGCAACACGATGTGGTCTGTGGTGGATAGAAATGTTAAAGGCACGTGATCAATATAAGGAGGCAGCTACTGTTTATTTTCGTATTTGTGGTGAGGATATCCTACATTCTGCTGTGATGCTTGAACAAGCATCGTACTGCTACTTGTTGTCTAAACCCTCCATGTTACGCAAATATGGATTTCATCTAGTGCTTTCTGGTGAGCAGTATAAAAAGTGTGATCAGATCAAACATGCAATTCGAACATACAGAAGTGCTCTTTCTGTTTTTAGAGGAACTACTTGGAGTTATATAAATGATCATGTTCATTTCCATATAGGACAGTGGTATGCTTCTCTTGGGATGTATGATGTGGCTGTCAAGCATATGATGGAAATCTTGGCCTGTAGTCACCAGTCCAAGACAACACAGGAATTATTCCTCGGCGACTTTCTTCAAATTGTGGAGAAAACTGGACAGACATTTGAAGTAACAAAACTTCAATTGCCTGTAATCAACATCTCTTCACTCAAGGTCATCTTCGAAGATTACCGAACTTTTGGAACACCTTCAGCTGCTAATACTAGAGAAGGCTTGTGGCGTTCTTTGGAGGAAGAAATGCTACCATCATTCTCTGCTGCCAAGACGAATTGGTTGGAGTTGCAATCAAAGCTTATCTCAAAAAAGCACAGTCAATCAAATGTTTGTGTTGCAGGCGAAGCTGTGAGGGTGAATATTGAATTTAAAAATCCTCTGCAAATCTCAATTCCCATATCTGGTGTTACACTTGTATGCAAGTATTCTGCCAGTACCGATGATGTTAGATCAGATGAGAATGAGTCAAGTGTGGAGAAAGATAATGAGGTTGACCACTTTAGGAATATGAGCTCTGACAATTCCTCATTTATGGTGTCTGAGGTTGATTTCTTACTAGGAGGCGGTGAAACAACCATGATTCAACTATCAGTTACTCCCAGGGCAGAGGGTACTCTTGAAATTCTTGGTGTTAGGTGGAAACTGTCTGGTACAATAGTTGGCTTTCACAACTTTGAGTTGGGCCACCCAAAGAAGATTATAAAAGGAAGAAGGAAAACAAAGCACTTGCCAAATGAGAAATTTAAATTTACGGTGATGAAGAGCATACCCAAGCTTCAGGGTTCCATTCACCCTCTACCTGGAAAGGCATATGCTGGAGATTTACAGCAACTTGTTTTGGAACTGAGGAATCCATCAGAGTTTCCTGTTAAGAATCTGAAGATGAAGATAAGTCATCCTAGATTACTGATAATTGGGAAGCAGGAAAATATGAAGTCAGAGTTTCCTGCATGCTTAAGAAAGAGGACTGATGCAGTACAAAGTGATGTGTATTCTAATCCTAATATCATGTCTGACACAGTCTTTTCGTTTCCAGAGGGCACATCAGTTCAAGGTGAAACACCCTTATTGTGGCCTCTTTGGTTTAGGGCTGCTGTTCCAGGTGATATATCACTTTACATGAGCATATATTATGAGATGGGAGATGTATCAAGTGTTATCAAATATCGTACTCTTCGCTTGCATTACAATGTGCAGGTATTGCCATCATTGGATGTCTCATTTCAAATAAGTCCTTCTCGATTAAGATTACAAGAATTTCTTGTTCGATTGGATGTTGTTAACAAGACTAGCTCAGAAAGTTTCCAAGTTTATCAGTTGTCGTCAGTTGGTCACCACTGGGAAATCTCATTACTTCAAGCTCCTGATACTATTTTTCCTTCACAATCATTGATGGCTGGTCAAGCAATATCTTGTTTCTTTACACTAAAGAAATCTTTGAGGTTTTCGACATTGGAGGACAACATATCTACATTGCCTGTCAGAAGTGATGTAAGATTGGTACCACAAAGCAGTGAGGATTTTGTTTATGATATAAACAGTGCACCTTTGGTCAATTTCCACCATTATGAAAGATTGCAGCAGGACGTTTCATATGAGGGTGACTTAAATCCTGTTGATTTTGTATTAATCTCTCGGCCATTCAAGAGTAACGATGATCCTGGTGTTTCCAATCCTCCTCATGTTATGTCTCATCATGCGTGTCACTTCAGTACTGCTAGCACGGGCCCTATTTCATGGCTAGTGGATGGACCTCAAACCTTGCATCATGACTTCTCTGCATCCTTCTGTGAAATAAGTCTGAAGATGCATATTTACAATTCTTCTGGTGCCACTGCTTTTGTACACATTGACACCTTAGATTCTGCTGGTAATGGTGGACATATGAACAGCGTAAATGTGGTTCAATCAACAACTCCTGATAACCAAGCAGGGTGGCATGATATCACACCAGTGAATGAACTCAAAGTCACATCAAATGTTCTTGAAACCCAACCAGAAACCCAACCAGGAAAGGCACTATCATTGGAAAGTGTGTCCTCGTATATTTGGTCTGGATCAAGCTCAACCAATCTCCATATCGAGGCTATGTCCTCGGCAGAAATTCCTCTTCAGATCTGTGTGTTCTCTCCAGGGACATATGACCTGTCAAGTTATGTTTTGAATTGGAAACTTCCATCCAATGGTAAGGTAGACAGTGATGAAACGAGGCAGCATTCAGGCAAGTGCCAGGGCTATAAATACTATCTTACCGTGCTCCAGTCCACTTGA 3885 0.409 MMMDPAMTPLGQMLLEEITPVVMLLSTPSVEEASLKNGLSFLQTLTPFCSFNNIDVPVRTASDQPYRLHKFKLRLFYASDVRRPDLKVAKEQLKQVITEAGEKEFSESCSDVSEINHELSSSSEYQNTPSWFRFLNKELVRVASFSDHEAFDHPVICLVAVSSKDEQAINRFVDLFNTNKLPSLLNDGAMDPKISKHYLLVHDNQDGPADRASKMLTDMRSTFGASDCSLLCINSSLDAPIKHQDNPWASYITDASPTPSQDLGCFLNIDDISEIKDLMQDLASKHVIPNMEQKIRVLNQQVSATRKGFKNQIKNLWWRKGKEDGADSLNGPTYNFNSIESQIRVLGDYAFMLRDYELALSNYRLISTDYKIDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFNTYLKLGSLGQLNATRCGLWWIEMLKARDQYKEAATVYFRICGEDILHSAVMLEQASYCYLLSKPSMLRKYGFHLVLSGEQYKKCDQIKHAIRTYRSALSVFRGTTWSYINDHVHFHIGQWYASLGMYDVAVKHMMEILACSHQSKTTQELFLGDFLQIVEKTGQTFEVTKLQLPVINISSLKVIFEDYRTFGTPSAANTREGLWRSLEEEMLPSFSAAKTNWLELQSKLISKKHSQSNVCVAGEAVRVNIEFKNPLQISIPISGVTLVCKYSASTDDVRSDENESSVEKDNEVDHFRNMSSDNSSFMVSEVDFLLGGGETTMIQLSVTPRAEGTLEILGVRWKLSGTIVGFHNFELGHPKKIIKGRRKTKHLPNEKFKFTVMKSIPKLQGSIHPLPGKAYAGDLQQLVLELRNPSEFPVKNLKMKISHPRLLIIGKQENMKSEFPACLRKRTDAVQSDVYSNPNIMSDTVFSFPEGTSVQGETPLLWPLWFRAAVPGDISLYMSIYYEMGDVSSVIKYRTLRLHYNVQVLPSLDVSFQISPSRLRLQEFLVRLDVVNKTSSESFQVYQLSSVGHHWEISLLQAPDTIFPSQSLMAGQAISCFFTLKKSLRFSTLEDNISTLPVRSDVRLVPQSSEDFVYDINSAPLVNFHHYERLQQDVSYEGDLNPVDFVLISRPFKSNDDPGVSNPPHVMSHHACHFSTASTGPISWLVDGPQTLHHDFSASFCEISLKMHIYNSSGATAFVHIDTLDSAGNGGHMNSVNVVQSTTPDNQAGWHDITPVNELKVTSNVLETQPETQPGKALSLESVSSYIWSGSSSTNLHIEAMSSAEIPLQICVFSPGTYDLSSYVLNWKLPSNGKVDSDETRQHSGKCQGYKYYLTVLQST 1294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03272 1294 Pfam ER-Golgi trafficking TRAPP I complex 85 kDa subunit 190 523 IPR024420 -
Pumo5g03272 1294 SUPERFAMILY TPR-like 434 555 IPR011990 GO:0005515
Pumo5g03272 1294 Gene3D Tetratricopeptide repeat domain 333 558 IPR011990 GO:0005515
Pumo5g03272 1294 PANTHER TRANSPORT PROTEIN TRAPP 2 1293 IPR024420 -
Pumo5g03272 1294 Pfam Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit 642 831 IPR013935 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03272 K20305 - gmx:100813062 2465.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03272 5 81877273 81893597 Pumo5g03272 5 81877273 81893597 ECH