Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03239 ATGGGCAACGCTCAGTCACCTCCCACTAATGATCCTCGATATGTTTCAGCAACCAGAGCTTTTACTCAAAAGGAACTAGAAGACCTGAGGTCTCTATTCAATCATCTGGCAGCTCAATCACAGAGCAACGCCAAATACATCTCTCCCTCTGTTTTTCAGTCATATTTTGGACTTCATGGCCCTCTTGGGGAGAGGATGTTTGATTTAGTTACTCAAGAGCGCAAGGATCAGAGGTTAACCTTTGAAGACCTCGTTGTTGCTAAAGCTACTTATCAGAAAGGAACAAAAGATGAAATTGAAGAATTCATCTTTCGCTTATTAGATGTATCCGGAGATAATTTTGTAGGGAGGTCTGATTTGGAAACTGTCATGATTGCCATTTTTAACGATATATTATGCATAAAAGGTTCTGAGGATAGATCAAGTTCATATCAGGACATTGTCAACATATTTCTGAATGCTGCAACATTCTCCATACATAATGAAGGGGGCACTGAGGAGACTATGTCTTTTGAAGATTTCAGAAGCTGGTGTACTCATCTCCCATCTGTGAAGAAGCTTCTTGGAAGCCTGCTTTTGCCACCTGATTCAGGACGACCTGGTTCTCAGATTCCTAAACTATTGACTTCGAAGGCTATTGATTCTAACCTTATACTTTTGAGAAAGGAATATGCTTGGCATATTGGAGGCGCACTTTCTCACCAAGACCTGGAAGATTGGAACCTTTTGTATCATAGTTCTGTTAATGGTCTTAGTTTTAATACATTCTTGGGCAACATTTCAAATCATGCAGGCCCAACTGTATTAATTATTAAGGATAAAGATGGTTATATATATGGAGGGTATGCTTCCCAACCATGGGAGCGGCATGCTGATTTTTACGGAGACCTGAAATGTTACCTTTTTCAACTAAATCCAGTGGCATCTATATTCAGGCCCACTGGAGCAAACAATAATCTACAATGGTGTGCTATCAACTTCAGTTCAGAGGACATTCCAAATGGCATTGGTTTTGGGGGACGAGTCAATCACTTGGGTTTTTTTATATCAGCAAACTTTGATCAAGGACATACATTTTCGTGTACCACGTTTGGTAGCCCTTGCCTCTCCAAGACTAACCGTATATTGCCAGAAGTAATAGAATGCTGGGGAGTCACTCAAGAAGCGACTCAAGACAACAATGATGCGGTCAAGGGCACTATTCTGGAGAGGTTCAAGGAAGATCGCAATATGCTCAAAATGGTAGGCCTGGCAAATTCCAGCGAGTAA 1269 0.4113 MGNAQSPPTNDPRYVSATRAFTQKELEDLRSLFNHLAAQSQSNAKYISPSVFQSYFGLHGPLGERMFDLVTQERKDQRLTFEDLVVAKATYQKGTKDEIEEFIFRLLDVSGDNFVGRSDLETVMIAIFNDILCIKGSEDRSSSYQDIVNIFLNAATFSIHNEGGTEETMSFEDFRSWCTHLPSVKKLLGSLLLPPDSGRPGSQIPKLLTSKAIDSNLILLRKEYAWHIGGALSHQDLEDWNLLYHSSVNGLSFNTFLGNISNHAGPTVLIIKDKDGYIYGGYASQPWERHADFYGDLKCYLFQLNPVASIFRPTGANNNLQWCAINFSSEDIPNGIGFGGRVNHLGFFISANFDQGHTFSCTTFGSPCLSKTNRILPEVIECWGVTQEATQDNNDAVKGTILERFKEDRNMLKMVGLANSSE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03239 422 ProSitePatterns EF-hand calcium-binding domain. 108 120 IPR018247 -
Pumo5g03239 422 ProSiteProfiles TLDc domain profile. 218 386 IPR006571 -
Pumo5g03239 422 PANTHER NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED 131 385 - -
Pumo5g03239 422 SUPERFAMILY EF-hand 6 191 IPR011992 -
Pumo5g03239 422 ProSiteProfiles EF-hand calcium-binding domain profile. 95 130 IPR002048 GO:0005509
Pumo5g03239 422 Gene3D - 3 190 - -
Pumo5g03239 422 Pfam TLD 242 385 IPR006571 -
Pumo5g03239 422 SMART 109ultra 219 386 IPR006571 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03239 Pumo-Chr5 81392220 81396698 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03239 103 421 EF-hand Containing Proteins AT5G06260 60.248 1.21e-150 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03239 - - gmx:100804508 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03239 5 81392220 81396698 Pumo5g03239 5 81392220 81396698 ECH