Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03235 ATGCAAGGGTGTTCCTCCTCCGACGCTCCACTCTCCAAGAGGTTAGATGGCAAAGTAGCACTCATAACCGGTGGAGCCAGTGGCATTGGCGAAGCCACCGCGAAGCTTTTCCTTCGCCACGGTGCCAAGGTCGTCATTGCCGACATCCAAGACAACCTCGGACACTCCCTTTGCCAAAACCTTAAGTCCGACAACATTTCTTATGTTCACTGCGACGTCACCAACGATAACGACCTTGAAACCGCAGTCAACACTGCCGTCTCGCGTTACGGCAAGCTTGACATCCTATTCAGTAACGCGGGCATCGCTGGCCGTTATGACTCTTCCAATTCCATCACGGCCATTGATCCCGCTGACTTAAAGAGGGTTTTCGAGGTCAACGTCTTCGGTGCTTTCTACGCCGCCAAGCACGCCGCTAAGGTAATGATTCCCAGAAAGAAAGGGAGCATTGTTTTCACTGCTAGCATTGCTTCGGTGTCAAATGCGGGTTCGGCGCACCCGTACGCGGCATCCAAGTACGCGGTGGTGGGTCTGATGAAGAACTTGTGCGTGGAGTTGGGGAAGCATGGAATCAGAGTTAATTGTGTTTCGCCATATGCGGTGGGGACTCCTATGCTAACAAATACAATGGAGATGGAGAAGGAGAAAGCAGAGCAAGTGTTTTTGGAGGCTGCGAACTTGAAGGGAGTGGTTCTAAAGGAAGAGGATGTGGCAGAAGCAACTTTGTTTCTGGCTAGTGAGGACTCTAAGTATGTGAGTGGAATGAATCTAGTTGTGGATGGAGGTTATAGTACCACCAATTCTTCTGCTGAACAAGCTTTCAGAAAGTTTTCTTTTAGGTAA 843 0.5006 MQGCSSSDAPLSKRLDGKVALITGGASGIGEATAKLFLRHGAKVVIADIQDNLGHSLCQNLKSDNISYVHCDVTNDNDLETAVNTAVSRYGKLDILFSNAGIAGRYDSSNSITAIDPADLKRVFEVNVFGAFYAAKHAAKVMIPRKKGSIVFTASIASVSNAGSAHPYAASKYAVVGLMKNLCVELGKHGIRVNCVSPYAVGTPMLTNTMEMEKEKAEQVFLEAANLKGVVLKEEDVAEATLFLASEDSKYVSGMNLVVDGGYSTTNSSAEQAFRKFSFR 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03235 280 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 13 267 - -
Pumo5g03235 280 CDD secoisolariciresinol-DH_like_SDR_c 14 264 IPR045309 GO:0016616
Pumo5g03235 280 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 264 IPR036291 -
Pumo5g03235 280 Pfam Enoyl-(Acyl carrier protein) reductase 24 264 - -
Pumo5g03235 280 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 155 183 IPR020904 GO:0016491
Pumo5g03235 280 Gene3D - 5 278 - -
Pumo5g03235 280 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Pumo5g03235 280 PRINTS Glucose/ribitol dehydrogenase family signature 227 247 IPR002347 -
Pumo5g03235 280 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Pumo5g03235 280 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Pumo5g03235 280 PRINTS Glucose/ribitol dehydrogenase family signature 189 206 IPR002347 -
Pumo5g03235 280 PRINTS Glucose/ribitol dehydrogenase family signature 91 102 IPR002347 -
Pumo5g03235 280 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Pumo5g03235 280 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Pumo5g03235 280 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 IPR002347 -
Pumo5g03235 280 FunFam Short-chain dehydrogenase reductase 4 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03235 Pumo-Chr5 81357707 81358652 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03235 11 265 Miscellaneous Gene Families AT4G05530 33.333 1.18e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03235 - - gmx:100803985 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03235 5 81357707 81358652 Pumo5g03235 5 81357707 81358652 ECH