Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03216 ATGGCAGGGGTGGAGAATAGTGACGGGAACGGGAGTGGAAGGGAATTAGCGGGAAATAACGATAACGGTTTTGCGGAAATTGCTGCAGAGGCTTCTGTTAGTGCTAGTGGCTTTGCTGGTTGTGAAGGGGACGATAGGGTTTCTTATGCGAACGTCCTGCGTTCGAGGAACAAGTTTGTCGATGCTCTTGCTATCTACGAGCGTGTGTTGGAGAGTGATGGTGCAAATGTAGAGGCGCTCATTGGAAAAGGAATATGCCTTCAGATGCAGAATAAGGGAAGGCTTGCGTATGAGAGTTTTTCCGAGGCTATCAAGCGGGATCCTCAAAATGCTTGTGCTCTCACGCATTGCGGTATTCTGCACAAGGACGAGGGTCGCCTTGTGGAGGCTTCTGAGTCATATCAGAAGGCTTTACAAGTGGATCCTTCATACAAAGCAGCTGCTGAATGCCTTGCCATTGTTTTAACAGATATTGGTACCAACATAAAGCTGGCAGGAAACACTCAGGATGGAATTCAAAAATATTTTGAAGCCCTCAAAGTAGATCCGCACTATGCTCCTGCATACTATAATCTTGGTGTGGTCTATTCTGAAATGATGCAATATGACATGGCCCTCAGTTTCTATGAAAAGGCTGCATCAGAGAGGCCTATCTATGCTGAAGCATATTGCAATATGGGTGTGATTTTTAAAAATCGTGGTGATTTGGAATCAGCTATTACTTGTTATGAGAGGTGTTTAACTGTTTCACCTAACTTTGAGATTGCAAAGAATAATATGGCTATAGCTTTGACAGATTTGGGAACAAAGGTTAAATTGGAGGGGGACATTAACCGAGGTGTGGCTTTGTATAAGAAAGCTTTGTATTACAACTGGCATTACGCTGATGCCATGTATAATCTTGGGGTTGCTTATGGTGAGATGCTTAAGTTTGATTTGGCCATTGTGTTCTATGAACTTGCCTTTCACTTCAATCCACATTGTGCGGAAGCCTGTAACAATCTCGGAGTTATATATAAAGATCGTGAAAACCTTGATAAAGCTGTAGAATGCTACCAGCTTGCTTTGTCAATCAAACCTAATTTTTCACAGTCGTTAAATAACCTCGGTGTTGTATACACTGTCCAGGGTAAAGTGGATGCTGCTGCAAGTATGATTGAGAAAGCTATTATTGCAAATCCAACATATGCAGAAGCATACAATAACCTAGGAGTTCTTTATAGGGATGCTGGTGATATAGCTCGAGCAATTAATGCTTATGAGCAATGTCTTAAGATTGATCCTGATTCTCGAAATGCTGGCCAGAATCGCTTGCTTGCAATGAATTACATAGAGGAAGGACATGATGACACACTTTTTGAGGTTCACAGGGACTGGGGTAGGCGATTCATGAGACTATATCCACAGTACACATCATGGGACAACTCAAAAGATCCTGAACGGCCCCTTGTGATAGGCTATGTATCTCCTGATTATTTTACTCATTCTGTGTCATATTTCATAGAAGCACCCCTTGTCTATCATGACTACTCCAATTTCAAAGTGATTGTTTATTCAGCAGTTGTCAAGGCAGATGCAAAAACCATTAGATTTAAAGAGAAAGTTTTAAATAAGGGTGGTTTCTGGAAAGATATTTATGGAATTGATGAAAAGAGGGTTGCCAACATGGTTAGAGAAGATCAAGTTGATATTTTGGTAGAACTTACTGGTCATACTGCAAACAATAAATTGGGAATGATGGCATGTCGACCTGCACCAATTCAGGTGACTTGGATTGGTTATCCCAATACAACTGGATTGCCTACAATTGATTATAGAATCACTGATTCACTGGCGGACCCTCCCGAAACAAAGCAGAAGCATGTTGAGGAGTTGGTTAGATTGCCTGAATGCTTCCTTTGTTACACCCCTTCCCCGGAGGCTGGTCCTGTTTGTCCAACTCCCGCTCTTTCCAATGGTTTCGTCACATTTGGTAGTTTCAACAATCTTGCCAAGATTACACCAAAGGTATTGCAGGTTTGGGCGAGGATACTATGTGCAATTCCGAATTCCCGCCTTGTGGTAAAATGTAAACCATTTTGCAGTGACAGTGTGCGACAGAGATTCCTTTCAACACTAGAGCAGTTGGGTTTAGAACCACTACGTGTTGATCTCCTGCCCCTTATTCTTCTTAACCATGATCATATGCAAGCCTATTCTCTGATGGACATCAGTTTGGATACATTTCCATATGCTGGAACAACAACAACATGTGAATCTTTATACATGGGAGTTCCATGTGTCACTATGGCTGGTTCAGTACATGCGCACAATGTTGGTGTTAGTCTTCTTAGCAAAGTTGGACTGGAGCATTTGATTGCCAGAAATGAAGATGAATACGTTGAATTGGCTCAGCAGTTGGCCTCTGACATTTCCGTACTACATAATTTGAGAATAAGTCTGCGAGATCTCATGTCCAAGTCCCCTCTCTGTAATGGTGCAAAATTTATCCTAGGTCTAGAGTCAACATACAGAAATATGTGGCACAGGTATTGTAGAGGAGATGTTCCATCTTTGAAACGCGTGGAATTGTTACAAGAAGTTGCTACTGATGACCTGTCAAATAATAATTCTGAGCCAACAAAGATTGCAAACTCAAGGGATAACAGTCCTGGATCTGTCAAGGCCAATGGATTTAATACAATGCCCGAGTCAAAGATTAATACAGAGAGTTGTGAAGAAAACGGTGGATCATCGAATCACAGTAGTAAACAAGGAAAGACAAGTTAA 2769 0.4175 MAGVENSDGNGSGRELAGNNDNGFAEIAAEASVSASGFAGCEGDDRVSYANVLRSRNKFVDALAIYERVLESDGANVEALIGKGICLQMQNKGRLAYESFSEAIKRDPQNACALTHCGILHKDEGRLVEASESYQKALQVDPSYKAAAECLAIVLTDIGTNIKLAGNTQDGIQKYFEALKVDPHYAPAYYNLGVVYSEMMQYDMALSFYEKAASERPIYAEAYCNMGVIFKNRGDLESAITCYERCLTVSPNFEIAKNNMAIALTDLGTKVKLEGDINRGVALYKKALYYNWHYADAMYNLGVAYGEMLKFDLAIVFYELAFHFNPHCAEACNNLGVIYKDRENLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKVDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDIARAINAYEQCLKIDPDSRNAGQNRLLAMNYIEEGHDDTLFEVHRDWGRRFMRLYPQYTSWDNSKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYSNFKVIVYSAVVKADAKTIRFKEKVLNKGGFWKDIYGIDEKRVANMVREDQVDILVELTGHTANNKLGMMACRPAPIQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELVRLPECFLCYTPSPEAGPVCPTPALSNGFVTFGSFNNLAKITPKVLQVWARILCAIPNSRLVVKCKPFCSDSVRQRFLSTLEQLGLEPLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLSKVGLEHLIARNEDEYVELAQQLASDISVLHNLRISLRDLMSKSPLCNGAKFILGLESTYRNMWHRYCRGDVPSLKRVELLQEVATDDLSNNNSEPTKIANSRDNSPGSVKANGFNTMPESKINTESCEENGGSSNHSSKQGKTS 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03216 922 ProSiteProfiles TPR repeat region circular profile. 329 361 - -
Pumo5g03216 922 ProSiteProfiles TPR repeat profile. 363 396 IPR019734 GO:0005515
Pumo5g03216 922 SMART sel1 295 326 IPR006597 -
Pumo5g03216 922 SMART sel1 397 428 IPR006597 -
Pumo5g03216 922 SMART sel1 329 360 IPR006597 -
Pumo5g03216 922 SMART sel1 186 217 IPR006597 -
Pumo5g03216 922 Pfam Tetratricopeptide repeat 365 390 - -
Pumo5g03216 922 Gene3D Tetratricopeptide repeat domain 297 367 IPR011990 GO:0005515
Pumo5g03216 922 Gene3D Tetratricopeptide repeat domain 156 220 IPR011990 GO:0005515
Pumo5g03216 922 ProSiteProfiles TPR repeat profile. 111 144 IPR019734 GO:0005515
Pumo5g03216 922 ProSiteProfiles TPR repeat profile. 397 430 IPR019734 GO:0005515
Pumo5g03216 922 ProSiteProfiles TPR repeat region circular profile. 397 429 - -
Pumo5g03216 922 Gene3D Tetratricopeptide repeat domain 42 155 IPR011990 GO:0005515
Pumo5g03216 922 ProSiteProfiles TPR repeat region circular profile. 220 252 - -
Pumo5g03216 922 ProSiteProfiles TPR repeat profile. 295 328 IPR019734 GO:0005515
Pumo5g03216 922 ProSiteProfiles TPR repeat profile. 186 219 IPR019734 GO:0005515
Pumo5g03216 922 Pfam Tetratricopeptide repeat 186 216 IPR001440 GO:0005515
Pumo5g03216 922 Pfam Tetratricopeptide repeat 220 253 IPR001440 GO:0005515
Pumo5g03216 922 Pfam Tetratricopeptide repeat 329 362 IPR001440 GO:0005515
Pumo5g03216 922 Pfam Tetratricopeptide repeat 397 429 IPR001440 GO:0005515
Pumo5g03216 922 SUPERFAMILY TPR-like 48 269 IPR011990 GO:0005515
Pumo5g03216 922 Gene3D Glycogen Phosphorylase B; 648 822 - -
Pumo5g03216 922 ProSiteProfiles TPR repeat region circular profile. 186 217 - -
Pumo5g03216 922 ProSiteProfiles TPR repeat profile. 220 253 IPR019734 GO:0005515
Pumo5g03216 922 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Pumo5g03216 922 Gene3D Tetratricopeptide repeat domain 368 451 IPR011990 GO:0005515
Pumo5g03216 922 SUPERFAMILY TPR-like 339 797 IPR011990 GO:0005515
Pumo5g03216 922 Pfam Glycosyl transferase family 41 471 633 IPR029489 -
Pumo5g03216 922 Pfam Glycosyl transferase family 41 650 829 IPR029489 -
Pumo5g03216 922 ProSiteProfiles TPR repeat profile. 329 362 IPR019734 GO:0005515
Pumo5g03216 922 Gene3D Tetratricopeptide repeat domain 221 296 IPR011990 GO:0005515
Pumo5g03216 922 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED 35 869 - -
Pumo5g03216 922 MobiDBLite consensus disorder prediction 864 922 - -
Pumo5g03216 922 FunFam probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY 261 459 - -
Pumo5g03216 922 SUPERFAMILY TPR-like 217 432 IPR011990 GO:0005515
Pumo5g03216 922 Gene3D - 467 643 - -
Pumo5g03216 922 SMART tpr_5 397 430 IPR019734 GO:0005515
Pumo5g03216 922 SMART tpr_5 77 110 IPR019734 GO:0005515
Pumo5g03216 922 SMART tpr_5 186 219 IPR019734 GO:0005515
Pumo5g03216 922 SMART tpr_5 261 294 IPR019734 GO:0005515
Pumo5g03216 922 SMART tpr_5 363 396 IPR019734 GO:0005515
Pumo5g03216 922 SMART tpr_5 43 76 IPR019734 GO:0005515
Pumo5g03216 922 SMART tpr_5 220 253 IPR019734 GO:0005515
Pumo5g03216 922 SMART tpr_5 152 185 IPR019734 GO:0005515
Pumo5g03216 922 SMART tpr_5 329 362 IPR019734 GO:0005515
Pumo5g03216 922 SMART tpr_5 295 328 IPR019734 GO:0005515
Pumo5g03216 922 SMART tpr_5 111 144 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03216 Pumo-Chr5 81155121 81167284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03216 205 898 Glycosyltransferase AT3G11540 64.562 0.0 902
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03216 K09667 - gmx:100785784 1744.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03216 5 81155121 81167284 Pumo5g03216 5 81155121 81167284 ECH