Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03215 ATGGATTCCATTGAAGTTAACTTCACCATGCAAAGCCACACAGAGACAAAGCAACAAGGCGTCCACACCTACGTTGCTCAGTGGCCAATTTCCTCTGTAGCATGGTCAATGCGCCGTGACAAAAGCCCACGCTTCGCCATTGGCAGTTACTTGGAAGACTACACCAACAAGGTTGAGCTTGTCCACTTCAACTACGACACGTTCAATTTCACCACCGACCCTCGTTTGGTGCTTGAGCACCCTTACGCACCAACAAACATCATGTTCTTCCCCTCCGAGGATGACACGAATCCCGACCTCGTTGCCACGTCAGGCGACAACCTAAGACTATGGGAAATCCACGAAGACCACATTCAACTAAAGTCCCCTCTAGTTGGTAACAAAGTTAGCGACCACTCGGCTATTACCTCGTTCGATTGGGCCGTGTTTGATACCCGTCTCGTAGCCACTTCTAGCGTAGACACCACGTGCACCATTTGGGACATTGAAAGAGAAATCATGAAGGCACAATTAGTGGCACATGACAAAGAGGTGTATGACATTTCGTGGGGCGGGTTTAATGTCTTTGCTTCCGTGTCAGGTGACGGTTCTGTGAGGGTGTTTGATTTAAGAGACAAGGAGAAATCGACCATAATATATGAGAATCCAGTGCAGGATTGTCCCTTGCTTCGTTTGGAATGGAACAAGAGTGATCCAAGGTTCATGGCCACGGTTGGACTAGACAGCAACAAGGTGGTGATATTGGATATTAGGCTACCAACCACACCGTTTATGGAGTTGAGTAAACATAGGTCATGTGTTAATGCTATGTCATGGTCCCCAGATTTTGGACGACATTTGTGCTCTGTTAGTGATGATGCAAGGGCCTTCATTTGGGAGGTGATGGACACAGGGTTCCCATCAGGGAATGGTTGTGATGTGGAGCCAGTGATGTGGTACGGTTCTTCAGCTGAAATCAACCACGTGCGTTGGTCCCCAGTGCAGATGGATTGGATTGCCCTTGCTTTCTTGAACAACTTACAACTACTCAAAGTGTAA 1038 0.4778 MDSIEVNFTMQSHTETKQQGVHTYVAQWPISSVAWSMRRDKSPRFAIGSYLEDYTNKVELVHFNYDTFNFTTDPRLVLEHPYAPTNIMFFPSEDDTNPDLVATSGDNLRLWEIHEDHIQLKSPLVGNKVSDHSAITSFDWAVFDTRLVATSSVDTTCTIWDIEREIMKAQLVAHDKEVYDISWGGFNVFASVSGDGSVRVFDLRDKEKSTIIYENPVQDCPLLRLEWNKSDPRFMATVGLDSNKVVILDIRLPTTPFMELSKHRSCVNAMSWSPDFGRHLCSVSDDARAFIWEVMDTGFPSGNGCDVEPVMWYGSSAEINHVRWSPVQMDWIALAFLNNLQLLKV 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03215 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 294 - -
Pumo5g03215 345 ProSitePatterns Trp-Asp (WD) repeats signature. 280 294 IPR019775 -
Pumo5g03215 345 Gene3D - 10 341 IPR015943 GO:0005515
Pumo5g03215 345 SUPERFAMILY WD40 repeat-like 27 335 IPR036322 GO:0005515
Pumo5g03215 345 SMART WD40_4 71 112 IPR001680 GO:0005515
Pumo5g03215 345 SMART WD40_4 164 202 IPR001680 GO:0005515
Pumo5g03215 345 SMART WD40_4 122 161 IPR001680 GO:0005515
Pumo5g03215 345 SMART WD40_4 208 249 IPR001680 GO:0005515
Pumo5g03215 345 SMART WD40_4 253 293 IPR001680 GO:0005515
Pumo5g03215 345 PANTHER WD REPEAT CONTAINING PROTEIN 11 345 IPR045159 -
Pumo5g03215 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 294 IPR001680 GO:0005515
Pumo5g03215 345 Pfam WD domain, G-beta repeat 171 202 IPR001680 GO:0005515
Pumo5g03215 345 Pfam WD domain, G-beta repeat 130 161 IPR001680 GO:0005515
Pumo5g03215 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 171 211 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03215 Pumo-Chr5 81133382 81135607 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03215 K11805 - zju:107416321 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03215 5 81133382 81135607 Pumo5g03215 5 81133382 81135607 ECH