Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03206 ATGAGCAGGTCAGGGCAACCACCGGATTTGAAGAAGTATATGGACAAGAAGCTTCAGATCAAGCTGAATGCAAATCGCATGATTGTTGGTACTCTCCGTGGCTTTGACCAGTTTATGAATTTAGTTGTTGACAACACTGTGGAAGTGAATGGCAACGAGAAAAATGACATAGGGATGGTGGTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCACTTGAACCTGTGAACAGGACCTGA 240 0.4417 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRT 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03206 79 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN 3 78 IPR044641 -
Pumo5g03206 79 SUPERFAMILY Sm-like ribonucleoproteins 9 76 IPR010920 -
Pumo5g03206 79 CDD Sm_G 6 74 IPR034098 GO:0000387|GO:0005681
Pumo5g03206 79 FunFam Small nuclear ribonucleoprotein G 1 76 - -
Pumo5g03206 79 Gene3D - 1 76 - -
Pumo5g03206 79 PIRSF Lsm7 5 78 - -
Pumo5g03206 79 SMART Sm3 8 72 IPR001163 -
Pumo5g03206 79 ProSiteProfiles Sm domain profile. 5 76 IPR047575 GO:0003723
Pumo5g03206 79 Pfam LSM domain 9 71 IPR001163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03206 Pumo-Chr5 81010023 81011529 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03206 K11099 - gmx:100305530 157.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03206 5 81010023 81011529 Pumo5g03206 5 81010023 81011529 ECH