Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03204 ATGGAGGCAGTAGCAGGCTCCCGCCATTTCTCCACTCTCTCCCTTTCTTTCTCTCACAACCACAACCGAACATTGCGCTCTTCTTCTGCCAAATCAATAAAGCTTTCCTCTCCTTGGACCAACGCTTCCTTATCTTCCAGGAACTGGTTCGCGAAGGAGGTATGGGGTTGGGTGAACGCCAAGGGCGTGGCCGTGAGAAGGGACACGCGCGGAGTGGTCGTGAGGGCTGAAATGTTTGGCCAATTGACAAGTGGCCTTGAGACTGCATGGAACAAGCTCAAAGGAGAAGAGGTTTTGTCTAAAGAGAACATTGTGGAGCCTATGCGAGATATTAGGAGAGCTCTCCTAGAAGCTGATGTTAGTCTTCCTGTTGTCAGAAGGTTTGTGCAGTCTGTCAGTGATCAGGCTGTGGGTGTTGGTGTCATTCGTGGAGTGAGGCCGGATCAGCAATTGGTTAAGATTGTACATGATGAACTTGTACAATTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCCAAATCTGGGCCCACTGTCATTTTATTGGCTGGACTCCAGGGAGTTGGGAAGACAACTGTTTGTGCAAAGTTGGCAAATTATCTCAAGAAACAGGGAAAAAGTTGCATGCTAGTTGCCGGGGATGTTTACAGACCTGCTGCTATTGACCAGCTTGCTATTTTGGGAAAACAGGTGGATGTGCCTGTCTATACAGCAGGTACCGATGTTAAACCTTCAGAAATTGCCAAACAAGGTTTAGAAGAGGCAAAAAAGAAGAAAATTGATGTTGTTATTGTTGATACTGCTGGTAGGCTGCAGATTGACAAGACAATGATGGATGAGTTAAAAGAAGTGAAAAAGGCATTGAATCCAACAGAAGTGTTGCTAGTTGTGGATGCAATGACAGGGCAAGAAGCCTGCAGGTCGTTGGTGACTACTTTCAATCTTGAGATTGGAATAACAGGTGCCATCTTGACGAAGCTTGATGGTGATTCAAGAGGTGGAGCAGCTTTGAGTGTCAAAGAGGTATCCGGGAAGCCAATTAAACTAGTAGGACGGGGGGAACGCATGGAGGATCTTGAACCTTTCTACCCTGATCGGATGGCAGGACGCATACTAGGAATGGGAGATGTTCTTTCTTTTGTAGAGAAGGCACAAGAAGTTATGCAACAAGAAGATGCTGAAGAACTGCAAAAGAAGATCATGAGTGCAAAGTTTGACTTCAATGATTTTCTAAAGCAAACTCGTACTGTTGCAAAAATGGGTTCTGTCTCTCGTGTCATTGGAATGATTCCTGGAATGGGGAAGGTTACTCCTGCTCAAATTCGAGATGCAGAGAAGAATTTGCAGAATATGGAAGCAATGATAGAAGCAATGACCCCTGAGGAGAGGGAAAAGCCAGAACTGTTGGCTGAATCCCCTGTCAGGAGGAAAAGAGTTGCTCAGGATTCAGGGAAAACAGAGCAGCAGGTAAGCCAACTTGTAGCTCAACTTTTCCAAATGCGTGTTCGTATGAAGAACCTGATGGGTGTAATGGAAAGTGGATCCCTTCCAACACTCAGTAATCTTGAGGAAGCGCTTAAAACAGAGGAAAAGGCTCCACCTGGCACTGCAAGGAGGAGGAAGAGATCGGAATCAAGGAGTGTATTTGTGGACTCAACACCAGCAAGGCCATCTCCTCGTGGTTTTGGGAGCAAAAATTGA 1701 0.4603 MEAVAGSRHFSTLSLSFSHNHNRTLRSSSAKSIKLSSPWTNASLSSRNWFAKEVWGWVNAKGVAVRRDTRGVVVRAEMFGQLTSGLETAWNKLKGEEVLSKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGVGVIRGVRPDQQLVKIVHDELVQLMGGEVSELVFAKSGPTVILLAGLQGVGKTTVCAKLANYLKKQGKSCMLVAGDVYRPAAIDQLAILGKQVDVPVYTAGTDVKPSEIAKQGLEEAKKKKIDVVIVDTAGRLQIDKTMMDELKEVKKALNPTEVLLVVDAMTGQEACRSLVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEELQKKIMSAKFDFNDFLKQTRTVAKMGSVSRVIGMIPGMGKVTPAQIRDAEKNLQNMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMESGSLPTLSNLEEALKTEEKAPPGTARRRKRSESRSVFVDSTPARPSPRGFGSKN 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03204 566 NCBIfam signal recognition particle protein 80 505 IPR004780 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Pumo5g03204 566 Hamap Signal recognition particle 54 kDa protein [srp54]. 82 523 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Pumo5g03204 566 Gene3D - 384 508 IPR036891 GO:0006614|GO:0008312|GO:0048500
Pumo5g03204 566 Gene3D - 81 383 IPR042101 -
Pumo5g03204 566 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 346 359 IPR000897 GO:0005525|GO:0006614
Pumo5g03204 566 Pfam SRP54-type protein, helical bundle domain 82 159 IPR013822 GO:0005525|GO:0006614
Pumo5g03204 566 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 78 513 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Pumo5g03204 566 Coils Coil 441 461 - -
Pumo5g03204 566 Pfam SRP54-type protein, GTPase domain 177 373 IPR000897 GO:0005525|GO:0006614
Pumo5g03204 566 SMART SRP54_3 177 373 IPR000897 GO:0005525|GO:0006614
Pumo5g03204 566 Pfam Signal peptide binding domain 404 502 IPR004125 GO:0006614|GO:0008312|GO:0048500
Pumo5g03204 566 SMART AAA_5 176 324 IPR003593 GO:0016887
Pumo5g03204 566 CDD SRP_G 178 371 - -
Pumo5g03204 566 Gene3D - 167 362 IPR027417 -
Pumo5g03204 566 SUPERFAMILY Signal peptide-binding domain 404 505 IPR036891 GO:0006614|GO:0008312|GO:0048500
Pumo5g03204 566 MobiDBLite consensus disorder prediction 521 566 - -
Pumo5g03204 566 SMART SRP54_N_2 78 163 IPR013822 GO:0005525|GO:0006614
Pumo5g03204 566 MobiDBLite consensus disorder prediction 462 483 - -
Pumo5g03204 566 MobiDBLite consensus disorder prediction 462 488 - -
Pumo5g03204 566 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 431 IPR027417 -
Pumo5g03204 566 FunFam Signal recognition particle 54 kDa subunit 168 362 - -
Pumo5g03204 566 MobiDBLite consensus disorder prediction 524 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03204 Pumo-Chr5 80989282 80995254 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03204 K03106 - gmx:100782581 1022.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03204 5 80989282 80995254 Pumo5g03204 5 80989282 80995254 ECH